Table 4 Comparison of differences in number of reads and genome coverage of three samples prepared with and without capture of NDV RNA
From: A robust and cost-effective approach to sequence and analyze complete genomes of small RNA viruses
Virus designation | Number of reads | % fewer reads without capture | Identity of consensus sequences | Missing sequences at genome termini and internal gaps (in number of nucleotides) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
With capture | Without capture | With capture | Without capture | |||||||
5′ | gaps | 3′ | 5′ | gaps | 3′ | |||||
691 | 403515 | 283501 | 29.7 | 100% | 20 | 0 | 0 | 26 | 0 | 0 |
698 | 363962 | 262452 | 27.9 | 100% | 0 | 0 | 0 | 25 | 0 | 0 |
901 | 415661 | 285405 | 31.3 | 100% | 0 | 94 | 0 | 22 | 84 | 0 |