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Table 3 Primers used for virus RT-PCR screening and virus quantification

From: Detection and genome characterization of four novel bat hepadnaviruses and a hepevirus in China

Primer

Sequence (5′-3′)a

Polarity

Targeted virus

Reference

HAV-3D-F1

CYTATHTRAARGATGAGCTKAGA

+

Hepatovirus

This study

HAV-3D-F2

ACRTCATCICCRTARCAIAGRA

+

HAV-3D-R1

RTCIAARACWAGRGCNATYG

-

HAV-3D-R2

TACCWAATCATRAATGGACT

-

HBV-pol-F1

TAGACTSGTGGTGGACTTCTC

+

Hepadnavirus

This study

HBV-pol-F2

AGTRAAYTGAGCCAGGAGAAAC

+

HBV-pol-R1

TGCCATCTTCTTGTTGGTTC

-

HBV-pol-R1

CATATAASTRAAAGCCAYACAG

-

BHV-1-F1

GTAGCGGAGAAGATGTATCTGGG

+

Hepacivirus

[11]

BHV-1-R1

GCCTTAGCCTTGAGAAAGCAGGTGAT

+

BHV-1-F2

GAGAAGATGTATCTGGGGGACGT

+

BHV-1-R2

AGAAAGCAGGTGATGGTATTGCC

+

BHV-2-F1

CCAAARGTWGTBAAGGCTGTGCT

-

BHV-2-R1

ACTTTGAKCCASGCAGTKARACAGTT

-

BHV-2-F2

GCTGTGCTSAAGGAMGAGTACGGCT

+

BHV-2-R2

CCASGCAGTKARACAGTTACTRGAG

-

DE-F4228

ACYTTYTGTGCYYTITTTGGTCCITGGTT

+

Hepevirus

[7]

DE-R4598

GCCATGTTCCAGAYGGTGTTCCA

-

DE-R4565

CCGGGTTCRCCIGAGTGTTTCTTCCA

-

BtHEV-qF

ATGTCCGTGTTCAGGTTCC

+

Bat hepevirus

This study

BtHEV-qR

GCCAACCCTCATTTGCAAC

-

 

BtHBV-qF

TGTTGGTTCTCCTGGATTGGAG

+

Bat hepadnaviruses

This study

BtHBV-qR

TGAAGGAATGGGCCAGCAGGTG

-

 
  1. R: G/A; Y: C/T; S: G/C; W: A/T; M: A/C; K: G/T; H: A/C/T; N: A/T/C/G; I: inosine