Table 1 The siRNAs of over 100 reads derived from Southern rice black-streaked dwarf virus
vsiRNA No. | Sequence (5’ to 3’) | Read count | Strand & position (nt) | GC% | Number of putative rice targets |
|---|---|---|---|---|---|
vsiRS1_1 | UAAUCGAGAUACACUCUGCGCC | 336 | (−) 4304-4325 | 50.0 | 2 |
vsiRS1_2 | AAUCGAGAUACACUCUGCGCC | 167 | (−) 4304-4324 | 52.4 | 1 |
vsiRS1_3 | UUGCGCAUUGUACUGACCUUGG | 114 | (+) 1400-1421 | 50.0 | 2 |
vsiRS1_4 | UCGAGAUACACUCUGCGCCCA | 104 | (−) 4302-4322 | 57.1 | 1 |
vsiRS3_1 | UUAGACGCAGAAUUGAAGAAUC | 237 | (+) 176-197 | 36.4 | 4 |
vsiRS3_2 | UUCAUUAGGUACUUGAUCUGA | 112 | (−) 3466-3486 | 47.6 | 14 |
vsiRS4_1 | UACAGGUAGUGAACACAAGCC | 112 | (+) 2684-2704 | 33.3 | 7 |
vsiRS4_2 | UACGAGACAAUGCAAACUGUA | 106 | (−) 465-485 | 38.1 | 9 |
vsiRS5_1 | ACACUCGUGACUCAAUUCUGCC | 209 | (+) 176-197 | 50.0 | 5 |
vsiRS5_2 | CACUCGUGACUCAAUUCUGCC | 176 | (+) 177-197 | 52.4 | 5 |
vsiRS5_3 | CACGAACAAGCAGACAACACU | 162 | (+) 112-132 | 47.6 | 2 |
vsiRS5_4 | UAGCGUUGUGAUUGUGAUCAAA | 128 | (−) 2927-2948 | 36.4 | 7 |
vsiRS5_5 | UUCACGACUUUGAAGACACCCA | 125 | (+) 155-176 | 45.5 | 0 |
vsiRS5_6 | UUCACGACUUUGAAGACACCC | 116 | (+) 155-175 | 47.6 | 0 |
vsiRS6_1 | UUGAGAGAACAAAGUGAUCGUU | 122 | (+) 1846-1867 | 36.4 | 9 |
vsiRS6_2 | UGAGAGAACAAAGUGAUCGUU | 119 | (+) 1847-1867 | 38.1 | 8 |
vsiRS6_3 | UGAGAUCUCUGUCCGUUAAAGA | 119 | (−) 2540-2561 | 40.9 | 14 |
vsiRS6_4 | UGGGCCGACGUAGUUGAAAGAA | 111 | (+) 1579-1600 | 50.0 | 7 |
vsiRS7_1 | UUGAAUAACAUUCUGUAGGAA | 228 | (−) 1851-1871 | 28.6 | 13 |
vsiRS7_2 | UCCAAUCAAGAUUCAAGAGCU | 109 | (+) 344-364 | 38.1 | 7 |
vsiRS8_1 | UCACUAGAAUCUACAUCGACCU | 217 | (−) 1882-1903 | 40.9 | 32 |
vsiRS8_2 | UCGCAAUGGCACGAGUAGGACU | 160 | (−) 1648-1669 | 54.5 | 4 |
vsiRS8_3 | AUGGCACGAGUAGGACUUAAUA | 120 | (−) 1643-1664 | 40.9 | 2 |
vsiRS8_4 | AAUGGCACGAGUAGGACUUAAU | 111 | (−) 1644-1665 | 40.9 | 1 |
vsiRS9_1 | AGAGAAUGGCAGACCUAGAGCG | 159 | (+) 47-68 | 54.5 | 0 |
vsiRS9_2 | UACAGUACCUCCAUUGAACACU | 147 | (−) 1746-1767 | 40.9 | 13 |
vsiRS9_3 | ACAGAUCAAUUGGACUUGGCU | 143 | (+) 349-369 | 42.9 | 8 |
vsiRS10_1 | UUAUGGAUAAGAUCGGGCGCUA | 134 | (−) 44-65 | 45.5 | 3 |