Skip to main content

Table 2 Summary of the transcriptome results

From: Transcriptome analysis of Cucumis sativus infected by Cucurbit chlorotic yellows virus

Library CCYV-infected Mock-inoculated
CCYV-1 CCYV-2 CCYV-3 CK-1 CK-2 CK-3
Total clean reads 34158314 39138040 29823892 32161272 36948220 33314552
High quality clean reads 33769294 (98.86%) 38661136 (98.78%) 29444160 (98.73%) 31754492 (98.74%) 36473130 (98.71%) 32946276 (98.89%)
Unique mapped reads 31165849 (92.37%) 35530271 (91.97%) 26854505 (91.28%) 29004918 (91.46%) 33297555 (91.40%) 30220259 (91.85%)
Number of mapped gene 17842 (76.75%) 18016 (77.49%) 17803 (76.58%) 17729 (76.26%) 17732 (76.27%) 17717 (76.21%)
  1. Total clean reads: the raw data after sequencing
  2. High-quality clean reads: the reads after filtering
  3. Unique mapped reads: the high-quality clean reads that can be mapped to the cucumber genome