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Table 1 Summary statistics of the sequencing reads performed in the Illumina platform

From: Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

Sample

Initial read count

Final read count (%)

Minimum mean QC (Phred)

Range of fragment length

BA3NI-I0

1,155,428

817,773 (70.8%)

27

75–136

BA3NI-I6-PI

1,052,378

793,149 (75.4%)

27

75–136

BA3NI-I9

1,083,813

799,653 (73.8%)

27

75–136

  1. Reads were preprocessed by trimming 15 nucleotides from the 5’ end, and then by trimming both ends using a sliding window of 3 nucleotides and an average Phred score of 25. This was followed by filtering reads such that 80% or more nucleotides had quality score over 20 and removing all reads with length less than 75
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Virology Journal

ISSN: 1743-422X