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Table 1 Summary statistics of the sequencing reads performed in the Illumina platform

From: Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

Sample Initial read count Final read count (%) Minimum mean QC (Phred) Range of fragment length
BA3NI-I0 1,155,428 817,773 (70.8%) 27 75–136
BA3NI-I6-PI 1,052,378 793,149 (75.4%) 27 75–136
BA3NI-I9 1,083,813 799,653 (73.8%) 27 75–136
  1. Reads were preprocessed by trimming 15 nucleotides from the 5’ end, and then by trimming both ends using a sliding window of 3 nucleotides and an average Phred score of 25. This was followed by filtering reads such that 80% or more nucleotides had quality score over 20 and removing all reads with length less than 75