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Table 2 Reference strains used in this study

From: Detection and phylogenetic analysis of porcine epidemic diarrhea virus in central China based on the ORF3 gene and the S1 gene

Reference strains Countries S gene(nt) ORF3 gene(nt) Accession no.
CV777 Belgium,1978 2367 675 AF353511.1
CV777 attenuated China, 1998 2364 276 KT323979.1
DR13/virulent Korea,1999 2367 675 JQ023161.1
CH/ZMDZY/11 China,2011 2376 675 KC196276.1
LZC China/Gansu,<2006 2367 675 EF185992.1
SM98 Korea,1998 2379 675 GU937797.1
MN USA,2013 2376 675 KF468752.1
IA1 USA,2013 2376 675 KF468753.1
IA2 USA,2013 2376 675 KF468754.1
DR13/attenuated Korea,2003 2364 276 JQ023162
SD-M China/Shandong,2012 2364 276 JX560761
GD-A China/Guangdong,2012 2376 675 JX112709
CH/S China/Shanghai,1986 2367 675 JN547228
TC PC177-P2 USA,2013 1785 675 KM392229
BJ-2011-1 China/Beijing,2011 2376 675 JN825712
AH2012 China/Anhui,2012 2376 675 KC210145
AJ1102 China/Hubei,2011 2376 675 JX188454
83P-5 Japan1983 2364 AB548621
CH/JX-1/2013 China/Jiangxi,2013 2376 675 KF760557
CH/JX-2/2013 China/Jiangxi,2013 2376 675 KJ526096
Brl/87 France, 1987 2367 Z25483
HN1303 China/Luoyang,2013 2376 KR080551
CH/FCH-01 China,2013 675 KF476054(O)
CH/JCH China,2013 675 KF476059(O)
CH/KF-01 China,2013 675 KF476051(O)
CH/XIP-03 China,2013 675 KF476058(O)
13-019349 USA,2013 2376 675 KF267450.1
Chinju99 Korea,2009 675 EU792474.1(O)
CH/HLJHH-2/2011 China,2012 675 JQ305099.1(O)
MK Japan,2013 2367 675 AB548624.1(cS)
AD01 Korea,2013 2376 KC879280.1(cS)
CH/HNZZ/2011 China,2011 2364 JN601050(S1)
CH/FJXM-1/2012 China,2012 2376 JX070671
MYG-1/JPN/2014 Japan,2014 1794 LC063838.1
TTR-2/JPN/2014 Japan,2014 252 LC063828.1
OH851 USA,2014 2367 675 KJ399978.1
SH/2015/124 China,2015 2376 675 KU710245.1(S1), KU641672.1(ORF3)