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Table 2 Comparison of Amino acid and Nucleotide identity of Ghanaian P[14] and published P[14] rotavirus strains

From: Detection of the first G6P[14] human rotavirus strain in an infant with diarrhoea in Ghana

Amino acid identity (%)

RV STRAIN

P-TYPE

MG6

Hun5

PA169

HAL1166

LRU62150

B10925

PR/1300

GHA-M0084

111-05-27

R2775

Bov/86

RUBV81

EGY3399

BP1879

Sp1524

Sp813

P14-3

B137

MG6

P[14]

 

68.9

68.1

60.9

50

70.4

68.9

62.6

68.9

68.9

69.1

68.4

65.4

53.7

73.1

65.9

26.4

75.1

Hun5

P[14]

88.6

 

86.3

68.4

52.9

85.6

87.8

73.1

92.4

89.3

87.9

88.7

90.2

55.9

70.1

82.5

24.2

69.9

PA169

P[14]

89.1

95.2

 

68.4

49.2

92.4

84

73.8

83.3

93.1

83.4

84.2

82.7

55.9

73.1

84

25

71.4

HAL_1166

P[14]

86

88.9

89.1

 

48.5

69.1

67.6

64.4

64.6

69.1

69.4

70.1

68.4

72.1

65.6

66.1

23.5

63.9

LRU62150

P[14]

80.1

80.8

79.7

79.4

 

50

52.2

45.9

52.9

47.7

52.5

53.2

51.4

51.4

50.3

47

20.7

50.7

B10925

P[14]

89.6

94.8

97.4

89.1

79.7

 

84

73.8

82.5

91.6

82.7

83.4

81.9

59.7

77.6

89.3

25

76.6

PR/1300

P[14]

88.9

95.9

94.8

88.6

80.8

94.5

 

73.1

86.3

87.8

84.9

85.7

84.2

56.7

69.4

78

24.2

68.4

GHA-M0084

P[14]

83.2

87.7

87.9

83.9

75.4

87.7

87.9

 

70.8

76.8

72.5

72.5

71.1

50.7

64.4

70.8

25.7

62.9

111-05-27

P[14]

88.9

97.4

94.1

87.2

80.4

93.6

95.2

87

 

86.3

84.9

85.7

89.4

58.2

68.6

80.3

25.7

67.6

R2775

P[14]

88.9

96.4

97.6

89.1

79.4

96.9

96.2

89.3

95.2

 

87.9

88.7

87.2

57.4

72.3

83.3

25

71.4

Bov/86

P[14]

88.9

95.5

94.1

89.1

80.6

93.6

94.8

87.9

94.3

95.7

 

99.2

85.8

59.2

71.1

75.9

24.8

70.1

RUBV81

P[14]

88.4

95.5

94.1

89.1

81.1

93.6

94.8

87.7

94.3

95.7

99.5

 

86.5

60

71.8

76.6

24.1

70.8

EGY3399

P[14]

88.2

96.2

94.3

89.3

80.8

93.8

94.5

87.2

95.5

95.5

95

95

 

59.7

67.9

79.6

25.7

66.9

BP1879

P[14]

78.7

79.9

79.9

85.3

75.2

80.8

80.4

74.7

80.8

80.6

80.8

80.8

81.1

 

60.7

53.7

20.7

58.9

Sp1524

P[14]

89.6

89.6

90.3

86.7

79

91.5

89.3

84.4

88.6

90.3

89.3

89.3

88.4

80.4

 

73.8

21.4

91.7

Sp813

P[14]

85.6

91.2

92.2

85.6

76.6

94.1

90

85.1

90.3

91.7

88.9

88.9

90.5

76.1

88.3

 

25.1

72.1

P14-3

P[14]

54.2

54.4

54.9

53.7

50.9

54.9

54

53.5

55.8

54.4

54.7

54.4

54.7

50.4

52.1

52.3

 

22.8

B137

P[14]

90.8

90

90.5

86.7

80.4

91.9

89.8

84.1

89.1

90.8

89.8

89.8

88.9

80.6

96.2

87.7

52.8

 

Nucleotide identity (%)