Table 1 Comparison of nucleotide and amino acid sequence identity of Ghanaian G6 and published G6 strains
From: Detection of the first G6P[14] human rotavirus strain in an infant with diarrhoea in Ghana
Nucleotide identity (%) | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
RV STRAIN | G-TYPE | PA169 | AG6 | ASG6 | MG6 | PA5 | B10925 | BA356 | 48-BF | PA77 | N-1 | Hun5 | Hun4 | ROBVP7G | NCDV | Hun7 | BoRo4 | PA27 | Hun3 | GHA-M0084 |
PA169 | G6 | 94.9 | 96.5 | 97.5 | 97.2 | 97.8 | 79.2 | 78.8 | 96.1 | 85.1 | 86.2 | 79.8 | 82.5 | 82 | 79.5 | 80.1 | 79.9 | 79.8 | 87.1 | |
AG6 | G6 | 96.7 | 97.2 | 97.1 | 94.1 | 94.5 | 76.9 | 76.5 | 93.3 | 83.9 | 85.2 | 78.4 | 81.4 | 81 | 77.2 | 78.8 | 78 | 78.4 | 85 | |
ASG6 | G6 | 99.1 | 96.7 | 98.7 | 96 | 96.1 | 78.6 | 78.2 | 95.2 | 85.8 | 86.5 | 79.5 | 82.6 | 82.4 | 78.4 | 79.9 | 79.4 | 79.5 | 86.2 | |
MG6 | G6 | 99.5 | 97.1 | 99.5 | 96.7 | 97.1 | 78.8 | 78.4 | 95.9 | 86.3 | 86.5 | 79.8 | 83.2 | 82.5 | 79.1 | 80.2 | 79.9 | 79.8 | 87.1 | |
PA5 | G6 | 98.7 | 96.3 | 98.7 | 99.1 | 97.1 | 79.8 | 79.4 | 98 | 85.4 | 86.3 | 79.9 | 83.2 | 82.5 | 79.9 | 80.2 | 80.2 | 79.9 | 87.7 | |
B10925 | G6 | 98.7 | 96.3 | 98.7 | 99.1 | 99.1 | 78.8 | 78.4 | 96.5 | 86.3 | 86.3 | 79.5 | 83.3 | 82.6 | 79 | 79.7 | 79.5 | 79.5 | 88.1 | |
BA356 | G6 | 92.2 | 89.3 | 92.6 | 92.2 | 91.4 | 91.4 | 99.5 | 79.7 | 78.8 | 78.6 | 86.2 | 79.8 | 80.2 | 96 | 85.9 | 93.4 | 86.2 | 74.9 | |
48-BF | G6 | 92.2 | 89.3 | 92.6 | 92.2 | 91.4 | 91.4 | 100 | 79.2 | 78.4 | 78.7 | 86.3 | 79.7 | 80.1 | 96.1 | 85.8 | 93.5 | 86.3 | 74.9 | |
PA77 | G6 | 99.1 | 96.7 | 99.1 | 99.5 | 99.5 | 99.5 | 91.8 | 91.8 | 85.4 | 86.5 | 79.9 | 83.1 | 82.8 | 79.8 | 80.1 | 80.1 | 79.9 | 87.6 | |
N-1 | G6 | 96.7 | 94.2 | 96.7 | 97.1 | 96.7 | 96.7 | 92.6 | 92.6 | 97.1 | 84.4 | 80.1 | 83.6 | 82.6 | 79.9 | 79.8 | 79.9 | 80.1 | 79.2 | |
Hun5 | G6 | 98.3 | 95.9 | 98.3 | 98.7 | 98.3 | 98.3 | 91.8 | 91.8 | 98.7 | 97.1 | 81.7 | 81.8 | 80.2 | 79.7 | 81.3 | 79.9 | 81.7 | 78.7 | |
Hun4 | G6 | 92.6 | 89.7 | 92.6 | 92.6 | 91.8 | 92.2 | 93.4 | 93.4 | 92.2 | 92.2 | 92.2 | 81 | 80.5 | 86.1 | 98.6 | 88.2 | 100 | 75.2 | |
ROBVP7G | G6 | 93 | 90.6 | 92.2 | 92.6 | 92.6 | 92.6 | 89.3 | 89.3 | 93 | 92.2 | 91.8 | 89.7 | 93.7 | 79.9 | 80.6 | 80.3 | 81 | 76.5 | |
NCDV | G6 | 91.8 | 89.3 | 91 | 91.4 | 91.4 | 91.4 | 88.9 | 88.9 | 91.8 | 91 | 90.6 | 89.3 | 95.9 | 80.3 | 80.2 | 80.7 | 80.5 | 75.8 | |
Hun7 | G6 | 93 | 90.2 | 92.6 | 93 | 92.2 | 92.2 | 98.7 | 98.7 | 92.6 | 93.4 | 92.6 | 93.8 | 90.2 | 89.7 | 85.4 | 95 | 86.1 | 75 | |
BoRo4 | G6 | 92.6 | 89.7 | 92.2 | 92.6 | 91.8 | 92.2 | 93 | 93 | 92.2 | 92.2 | 92.2 | 99.1 | 89.7 | 89.3 | 93.8 | 88.2 | 98.6 | 75 | |
PA27 | G6 | 92.6 | 89.7 | 92.2 | 92.6 | 91.8 | 91.8 | 97.1 | 97.1 | 92.2 | 93.4 | 92.2 | 94.2 | 90.6 | 90.2 | 97.9 | 94.2 | 88.2 | 75.2 | |
Hun3 | G6 | 92.6 | 89.7 | 92.6 | 92.6 | 91.8 | 92.2 | 93.4 | 93.4 | 92.2 | 92.2 | 92.2 | 100 | 89.7 | 89.3 | 93.8 | 99.1 | 94.2 | 75.2 | |
GHA-M0084 | G6 | 85.7 | 83.2 | 85.7 | 86.1 | 86.1 | 86.9 | 80.4 | 80.4 | 86.5 | 85.7 | 85.7 | 81.2 | 81.2 | 80 | 81.2 | 81.2 | 80.8 | 81.2 | |
Amino acid identity (%) | ||||||||||||||||||||