Ecogenomic survey of plant viruses infecting Tobacco by Next generation sequencing

Table 2 Analysis of the assembled contigs against sequences in the NCBI database, using a highly homology sequence search

Library Source	Library Name	Viruses	No of contigs identical to Blastn	Size (nt)	G + C %	Mapped Organism	Relative (ref Seq)
Xuancheng	Xch 1	CMV-Xch-1	43	2874	45.95	Cucumber Mosaic Virus	3357
		PVY-Xch-1	20	9292	42.53	Potato Virus Y	9704
		PeMV-Xch	14	9632	43.42	Pepper Mottle Virus	9640
	Xch 2	CMV-Xch-2	24	2922	44.92	Cucumber Mosaic Virus	3357
		TMV-Xch-2	23	4679	42.87	Tobacco Mosaic Virus	6395
Xuancheng/Wuhu	Xch-Wh	CMV-Xch-Wh	5	3102	45.34	Cucumber Mosaic Virus	3357
		PVY-Xch-Wh	14	9302	42.02	Potato Virus Y	9704
		BrYV-Xch-Wh	12	3494	42.86	Brassica Yellow Virus	5666
		TMV-Xch-Wh	31	5808	43.10	Tobacco Mosaic Virus	6395
Dongzhi/Qingyang	Dzh-Qyg	TMV-Dzh-Qyg	33	5571	43.10	Tobacco Mosaic Virus	6395
		CVMV-Dzh-Qyg	20	9499	41.08	Chilli venial mottle virus	9711
Bozhou	Bzh-1	PVY-Bzh-1	21	8826	42.18	Potato Virus Y	9704
	Bzh-2	CMV-Bzh-2	29	2786	38.42	Cucumber Mosaic Virus	3357
	Bzh-3	PVY-Bzh-3	34	9560	42.46	Potato Virus Y	9704
		CMV-Bzh-3	18	2754	45.51	Cucumber Mosaic Virus	3357
		TvBMV-Bzh-3	41	9148	42.15	Tobacco Vein Banding Mosaic virus	9570
	Bzh-4	PVY-Bzh-4	37	9412	42.11	Potato Virus Y	9704
		CMV-Bzh-4	16	2836	45.89	Cucumber Mosaic Virus	3357
		TvBMV-Bzh-4	31	9449	42..12	Tobacco Vein Banding Mosaic virus	9570
	Bzh-5	CMV-Bzh-5	24	2967	46.22	Cucumber Mosaic Virus	3357
		BBWV2-Bzh-5	29	3106	43.59	Broad Bean Wilt Virus 2	3607
		TvBMV-Bzh-5	35	9312	41.97	Tobacco Vein Banding Mosaic virus	9570
		Total=	554

Note: Reference used were retrieved from the NCBI database Cucumber mosaic virus (NC_002034.1), Potato virus Y(NC_001616.1), Tobacco mosaic virus(NC_001367.1), Tobacco vein banding Mosaic virus(NC_009994.1), Pepper mottle virus(NC_001517.1), Brassica yellow virus(NC_016038.1), Chilli venial mottle virus(NC_005778.1), Broad bean wilt virus 2(NC_003004.1)

ISSN: 1743-422X