Table 1 Description of Next generation sequencing data from one hundred and four samples
From: Ecogenomic survey of plant viruses infecting Tobacco by Next generation sequencing
Library Source (City) | Library Name | No of Samples | Raw Reads | Clean reads | Unique Seq | No of Contigs Assembled by Velvet (k = 17) |
|---|---|---|---|---|---|---|
Xuancheng | Xch 1 | 14 | 44,729,605 | 38,973,127 | 7,051,733 | 7952 |
Xch 2 | 11 | 49,938,373 | 45,290,836 | 7,131,823 | 7038 | |
Xuancheng/Wuhu | Xch-Wh | 5 | 38,747,172 | 34,282,436 | 5,985,886 | 6346 |
Dongzhi/Qingyang | Dzh-Qyg | 11 | 43,827,189 | 38,882,338 | 6,522,149 | 6776 |
Bozhou | Bzh 1 | 17 | 45,974,903 | 39,218,493 | 7,582,592 | 8133 |
Bzh 2 | 11 | 41,574,669 | 36,303,201 | 7,641,767 | 8981 | |
Bzh 3 | 9 | 43,324,495 | 37,668,456 | 6,579,416 | 7388 | |
Bzh 4 | 8 | 41,720,630 | 37,414,819 | 6,770,175 | 8011 | |
Bzh 5 | 18 | 38,277,531 | 32,358,941 | 6,088,147 | 6698 |