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Table 9 Site-specific tests for positive selection on HPV-58 L2

From: L1 and L2 gene polymorphisms in HPV-58 and HPV-33: implications for vaccine design and diagnosis

Models

InL

Estimates of parameters

2Δl

Positively selected sites

M7

−2432.604

p = 0.005 q = 0.048

 

NA

M8

−2424.886

p0 = 0.978 p = 2.63 q = 99.000

(p1 = 0.022) ω = 5.255

15.436 p < 0.01

231 N*,416A*,446 M*

  1. Note: Tables 6, 7, 8 and 9: ln L, the log-likelihood difference between the two models; 2Δl, twice the log-likelihood difference between the two models; the positively selected sites were identified with posterior probability ≥ 0.9 using Bayes empirical Bayes (BEB) approach ne asterisk indicates posterior probability ≥ 0.95, and two asterisks indicate posterior probability ≥ 0.99. NA means not allowed. NS means the sites under positive selection but not reaching the significance level of 0.9