Table 1 Pairwise nucleotide (amino acid) % identity between Sabin 1, Sabin 2 and Sabin 3 and 4 PV3 isolates in all sequenced genomic regions
Genomic region | RF108 | RF134 | RF146 | RF151 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sabin 1 | Sabin 2 | Sabin 3 | Sabin 1 | Sabin 2 | Sabin 3 | Sabin 1 | Sabin 2 | Sabin 3 | Sabin 1 | Sabin 2 | Sabin 3 | |
5′UTR | 80.3 | 80.4 | 99.9 | 80.3 | 80.4 | 99.9 | 80.3 | 80.4 | 99.9 | 80.0 | 80.2 | 99.6 |
VP4 | 77.3 (92.8) | 75.2 (90.6) | 100 (100) | 77.3 (92.8) | 75.2 (92.6) | 100 (100) | 77.3 (92.8) | 75.2 (92.6) | 100 (100) | 77.3 (92.8) | 75.2 (92.6) | 100 (100) |
VP2 | 70.3 (82.4) | 70.2 (81.2) | 99.9 (100) | 70.3 (82.4) | 70.2 (81.2) | 99.9 (100) | 70.3 (82.4) | 70.2 (81.2) | 99.9 (100) | 70.5 (82.7) | 70.2 (81.2) | 99.9 (100) |
VP3 | 72.4 (84.5) | 73.4 (86.1) | 99.7 (99.2) | 72.1 (84.0) | 73.4 (86.6) | 100 (100) | 72.1 (84.0) | 73.4 (86.6) | 100 (100) | 72.1 (84.0) | 73.4 (86.6) | 100 (100) |
VP1 | 65.1 (74.9) | 68.8 (78.5) | 99.8 (99.3) | 65.1 (74.9) | 68.5 (78.5) | 99.8 (99.3) | 65.3 (75.6) | 68.8 (78.5) | 99.8 (99.3) | 65.1 (74.9) | 68.8 (78.5) | 99.8 (99.3) |
2A | 80.8 (94.0) | 78.7 (93.3) | 99.8 (100) | 80.8 (94.0) | 78.7 (93.3) | 99.8 (100) | 80.8 (94.0) | 78.7 (93.3) | 99.8 (100) | 80.8 (94.0) | 78.7 (93.3) | 99.8 (100) |
2B | 76.3 (91.8) | 81.8 (94.8) | 100 (100) | 76.3 (91.8) | 81.8 (94.8) | 100 (100) | 76.3 (91.8) | 81.8 (94.8) | 100 (100) | 76.3 (91.8) | 81.8 (93.3) | 100 (100) |
2C | 82.1 (97.6) | 87.5 (97.6) | 97.5 (98.8) | 82.8 (97.0) | 85.1 (96.4) | 99.9 (100) | 82.7 (97.0) | 85.2 (96.4) | 99.8 (100) | 82.7 (97.0) | 85.1 (96.4) | 99.9 (100) |
3A | 82.8 (98.9) | 100 (100) | 82.4 (97.7) | 85.4 (98.9) | 82.4 (97.7) | 100 (100) | 85.4 (98.9) | 82.4 (97.7) | 100 (100) | 85.4 (98.9) | 82.4 (97.7) | 100 (100) |
3B | 83.3 (95.5) | 100 (100) | 86.4 (95.5) | 86.4 (90.9) | 84.8 (95.5) | 98.5 (100) | 86.4 (90.9) | 84.4 (95.5) | 98.5 (100) | 86.4 (90.9) | 84.8 (95.5) | 98.5 (100) |
3C | 86.7 (98.4) | 99.6 (100) | 86.5 (97.3) | 89.6 (98.9) | 86.5 (97.3) | 100 (100) | 89.6 (99.5) | 86.5 (97.8) | 99.6 (99.5) | 89.6 (99.5) | 86.5 (97.3) | 100 (100) |
3D | 87.1 (97.8) | 99.9 (100) | 85.8 (97.6) | 86.0 (97.8) | 92.0 (97.8) | 93.5 (99.8) | 85.3 (97.0) | 85.6 (97.0) | 99.6 (99.3) | 85.4 (97.4) | 92.0 (97.8) | 93.5 (99.8) |
3′UTR | 91.5 | 95.7 | 93.0 | 95.8 | 100 | 97.2 | 91.5 | 95.7 | 93.0 | 91.5 | 100 | 97.2 |
Genome | 78.5 (90.7) | 84.0 (92.0) | 95.1 (98.8) | 78.8 (90.5) | 80.5 (91.0) | 98.7 (99.9) | 78.6 (90.5) | 79.3 (90.9) | 99.7 (99.7) | 78.6 (90.50 | 79.1 (91.0) | 99.7 (99.7) |