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Table 2 Nucleotide similarities (%) of S and N genes of our five PDCoV isolates and other reported PDCoVs and coronaviruses

From: Occurrence and sequence analysis of porcine deltacoronaviruses in southern China

   S gene N gene
GenBank No.   KU204694 KU204695 KU204696 KU204697 KX534090 KU204698 KU204699 KU204700 KU204701 KX534091
  Strain CH/GD01/2015 CH/GD02/2015 CH/HN01/2015 CH/GX01/2015 CH/GD03/2015 CH/GD01/2015 CH/GD02/2015 CH/HN01/2015 CH/GX01/2015 CH/GD03/2015
KR131621 PDCoV/CHJXNI2/2015 99.5 98.9 98.9 99.1 99.2 99.7 99.1 99.1 99.3 99.4
KP757892 CHN-JS-2014 99.1 98.5 98.5 98.7 98.7 99.3 99.3 99.3 99.5 99.0
KP757891 CHN-HB-2014 98.9 98.4 98.4 98.7 98.5 98.8 98.6 98.6 98.8 98.5
JQ065042 HKU15-44 98.6 98.2 98.2 98.5 98.3 98.7 98.5 98.5 98.7 98.4
JQ065043 HKU15-155 98.5 98.2 98.2 98.4 98.2 98.7 98.5 98.5 98.7 98.4
KT021234 CH/SXD1/2015 98.4 97.9 97.9 98.1 98.0 99.0 98.8 98.8 99.0 98.7
KT266822 CH/Sichuan/S27/2012 98.4 98.0 98.0 98.2 98.0 99.2 99.0 99.0 99.2 98.9
KM820765 KNU14-04 98.4 97.9 97.9 98.2 98.1 98.8 98.6 98.6 98.8 98.5
KJ620016 MI6148 98.4 97.9 97.9 98.1 98.0 98.8 98.6 98.6 98.8 98.5
KJ584360 MN3092 -a -a -a -a -a 98.8 98.6 98.6 98.8 98.5
KJ584358 PA3148 98.4 98.0 98.0 98.2 98.0 98.8 98.6 98.6 98.8 98.5
KJ584357 KY4813 98.4 97.9 97.9 98.1 98.0 98.8 98.6 98.6 98.8 98.5
KJ584355 IL2768 98.4 97.9 97.9 98.1 98.0 98.8 98.6 98.6 98.8 98.5
KT381613 OH11846 98.4 97.9 97.9 98.1 98.0 98.8 98.6 98.6 98.8 98.5
KJ601779 PDCoV/USA/Illinois136/2014 98.4 97.9 97.9 98.1 98.0 98.5 98.3 98.3 98.5 98.3
KJ481931 PDCoV/USA/Illinois121/2014 98.4 97.9 97.9 98.1 98.0 98.5 98.3 98.3 98.5 98.3
KJ769231 OhioCVM1/2014 98.4 97.8 97.8 98.1 98.0 98.3 98.2 98.2 98.3 98.1
KJ601777 PDCoV/USA/Illinois133/2014 98.4 97.8 97.8 98.1 98.0 98.7 98.5 98.5 98.7 98.4
KJ584359 NE3579 98.4 97.8 97.8 98.1 98.0 98.7 98.5 98.5 98.7 98.4
KJ584356 SD3424 98.4 97.8 97.8 98.1 98.0 98.5 98.3 98.4 98.5 98.3
KJ462462 OH1987 98.4 97.8 97.8 98.1 98.0 98.7 98.5 98.5 98.7 98.4
KJ601778 PDCoV/USA/Illinois134/2014 98.3 97.8 97.8 98.0 98.0 98.7 98.5 98.5 98.7 98.4
KP995358 OH-FD22 98.3 97.8 97.8 98.0 98.0 -b -b -b -b -b
KJ601780 PDCoV/USA/Ohio137/2014 98.3 97.8 97.8 98.0 98.0 98.7 98.5 98.5 98.7 98.4
KJ569769 IN2847 98.3 97.8 97.8 98.1 98.0 98.8 98.6 98.6 98.8 98.5
KJ567050 8734/USA-IA/2014 98.3 97.9 97.9 98.1 98.0 98.7 98.5 98.5 98.7 98.4
KP981395 USA/IL/2014/026PDV_P11 98.3 97.8 97.8 98.0 97.9 98.7 98.5 98.5 98.7 98.4
KM012168 Michigan/8977/2014 98.3 97.8 97.8 98.0 97.9 98.7 98.5 98.5 98.7 98.4
KP757890 CHN-AH-2004 98.0 97.5 97.5 97.8 97.7 98.1 97.9 97.9 98.1 97.8
KU051641 PDCoV/Swine/Thailand/S5011/2015 95.8 95.6 95.6 95.9 95.4 97.1 96.9 96.9 97.1 96.8
KU051649 PDCoV/Swine/Thailand/S5015L/2015 95.8 95.5 95.5 95.9 95.4 97.1 96.9 96.9 97.1 96.8
KU984334 P23_15_TT_1115 95.9 95.8 95.6 95.9 95.5 97.8 97.8 97.8 98.0 97.5
EF584908 Guangxi/F230/2006 97.5 97.1 97.1 97.3 97.0 98.0 97.8 97.8 98.0 97.7
JQ065045 HKU17-6124 40.9 40.8 40.8 40.7 40.7 92.9 92.6 92.8 92.9 92.6
FJ376621 HKU12-600 40.7 41.1 41.1 41.0 40.6 76.4 75.7 76.2 76.3 76.3
JQ065044 HKU16-6847 57.0 56.9 56.9 57.0 57.2 75.1 75.3 75.2 75.4 75.1
FJ376619 HKU11-934 65.9 68.9 68.9 66.1 65.8 74.4 74.3 74.5 74.4 74.2
FJ376620 HKU11-796 65.3 65.6 65.7 65.6 65.1 74.4 74.6 74.5 74.4 74.2
KJ408801 OH1414 (PEDV) 38.2 38.3 38.3 38.1 37.8 3.6 3.5 3.5 3.6 3.6
FJ755618 H16(TGEV) 38.1 38.1 38.1 38.0 37.9 2.8 4.9 7.5 5.0 2.8
DQ811787 ISU-1(PRCV) 37.4 25.7 25.7 25.7 37.3 7.3 7.4 7.5 7.4 7.4
BCU00735 Mebus(bovine) 12.4 12.5 12.5 12.4 7.1 2.1 2.1 2.1 2.1 2.1
AY654624 TJF(SARS) 6.8 6.9 6.9 6.8 6.9 8.8 8.8 2.4 8.8 8.1
DQ011855 VW572(PHEV) 21.9 21.9 21.9 21.9 21.8 2.1 2.1 2.1 2.1 2.1
JF893452 YN(CIBV) 22.0 22.1 22.1 22.3 22.0 12.5 12.5 12.5 12.6 12.4
NC_010800 MG10 (Turkey) 24.1 23.5 23.5 23.3 24.0 14.0 14.0 14.0 14.1 14.1
NC_010646 SW1 (whale) 15.0 13.7 13.7 13.8 14.8 7.7 7.7 7.7 7.7 7.7
  1. aS gene of MN3092 was not complete; bS gene of OH-FD22 was not available