Table 2 Position of putative indels in measles strains with non-canonical genome organization
Strain name (GenBank acc. no.) | Genotype | Submitted by | Insertion | Deletion | Genome length | ||
|---|---|---|---|---|---|---|---|
Mutation | Genomic region* | Mutation | Genomic region* | ||||
WA.USA/17.98 (DQ227321) | D6 | Forcic et al. | +T or + C (T1C2 or T2C1 → T2C2) | 4532–4534, M gene 3′ UTR | –N | 5052–5078, F gene 5′ UTR | 15,894 |
97-45881 (DQ227319) | D6 | Forcic et al. | +A (A7 → A8) | 4524–4531, M gene 3′ UTR | -N | 5052–5078, F gene 5′ UTR | 15,894 |
MVs/Zagreb.CRO/47.02/[D6] SSPE (DQ227318) | D6 | Forcic et al. | +A (A7 → A8) | 4509–4516, M gene 3′ UTR | –NN | 5053–5078, F gene 5′ UTR | 15,894 |
+C (C6 → C7) | 4519–4525, M gene 3′ UTR | ||||||
MVs/Zagreb.CRO/08.03/SSPE (DQ227320) | D6 | Forcic et al. | +A (A6 → A7) | 4524–4530, M gene 3′ UTR | –A (A4 → A3) | 7087–7089 F gene ORFa | 15,894 |
MVi/Tokyo.JPN/37.99(Y) (GQ376026) MVi/Tokyo.JPN/37.99(Y)C7 (GQ376027) SSPE-Kobe-1 (AB254456) | D3 D3 | Haga et al. Haga et al. Hotta et al. | +N | 5051–5079, F gene 5′ UTR | -A (A5 → A4) | 7025–7028, F gene ORFb | 15,894 |
MVi/Florida.USA/19.09 (JN635402) MVi/New York.USA/26.09/3 (JN635403) MVi/Treviso.ITA/03.10/1[D4] (KC164757) | D4 D4 D4 | Rota et al. Rota et al. Palù et al. | +7C (C5 → C12) | 4763–4774, M gene 3′ UTR | -A | 5071–5076, F gene 5′ UTR | 15,900 |
Edmonston (K01711) | A | Cattaneo et al. | +A (A2 → A3) | 29–31, leader | -A (A6 → A5) | 3398–3402, P gene 3′ UTRc | 15,894 |