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Table 2 Position of putative indels in measles strains with non-canonical genome organization

From: Common position of indels that cause deviations from canonical genome organization in different measles virus strains

Strain name (GenBank acc. no.) Genotype Submitted by Insertion Deletion Genome length
Mutation Genomic region* Mutation Genomic region*
WA.USA/17.98 (DQ227321) D6 Forcic et al. +T or + C (T1C2 or T2C1
→ T2C2)
4532–4534, M gene 3′ UTR –N 5052–5078, F gene 5′ UTR 15,894
97-45881 (DQ227319) D6 Forcic et al. +A (A7 → A8) 4524–4531, M gene 3′ UTR -N 5052–5078, F gene 5′ UTR 15,894
MVs/Zagreb.CRO/47.02/[D6] SSPE (DQ227318) D6 Forcic et al. +A (A7 → A8) 4509–4516, M gene 3′ UTR –NN 5053–5078, F gene 5′ UTR 15,894
+C (C6 → C7) 4519–4525, M gene 3′ UTR
MVs/Zagreb.CRO/08.03/SSPE (DQ227320) D6 Forcic et al. +A (A6 → A7) 4524–4530, M gene 3′ UTR –A (A4 → A3) 7087–7089 F gene ORFa 15,894
MVi/Tokyo.JPN/37.99(Y) (GQ376026) MVi/Tokyo.JPN/37.99(Y)C7 (GQ376027) SSPE-Kobe-1 (AB254456) D3
D3
Haga et al.
Haga et al.
Hotta et al.
+N 5051–5079, F gene 5′ UTR -A (A5 → A4) 7025–7028, F gene ORFb 15,894
MVi/Florida.USA/19.09 (JN635402) MVi/New York.USA/26.09/3 (JN635403) MVi/Treviso.ITA/03.10/1[D4] (KC164757) D4
D4
D4
Rota et al.
Rota et al.
Palù et al.
+7C (C5 → C12) 4763–4774, M gene 3′ UTR -A 5071–5076, F gene 5′ UTR 15,900
Edmonston (K01711) A Cattaneo et al. +A (A2 → A3) 29–31, leader -A (A6 → A5) 3398–3402, P gene 3′ UTRc 15,894
  1. UTR untranslated region, ORF open reading frame
  2. Mutations within the same segment in F gene 5′ UTR (corresponding to positions within 5051–5078 region in canonical strains) are shown in bold
  3. *nucleotide numbering corresponds to positions in genomic cDNA
  4. amutation causes frameshift after codon for amino acid 543 and translation termination after amino acid 546
  5. bmutation causes frameshift after codon for amino acid 523 and translation termination after amino acid 534
  6. cregion used for pseudo-templated polyadenilation of P/V/C mRNAs