Characterization and analysis of an infectious bronchitis virus strain isolated from southern China in 2013

Table 2 Recombination breakpoints, genes, and major and minor related sequences in the genome of strain GD

Breakpoints		Genes	Major sequence	Minor sequence	Detection method
Start	End	Genes	Major sequence	Minor sequence	Detection method
597	5519	1ab	BJ (QX-type)	SAIBK (YN-type)	RDP, Bootscan, GENECONV, MaxChi, Chimaera, SiScan, 3Seq
5507	9056	1ab	CK/CH/LDL/091022 (QX-type)	CK/CH/LJL/110302 (QX-type)	RDP, Bootscan, GENECONV, MaxChi, Chimaera, SiScan, 3Seq
20100	22385	S1, S2	CK/CH/LDL/091022 (QX-type)	TW2575/98 (TW-type)	RDP, Bootscan, GENECONV, MaxChi, Chimaera, SiScan, 3Seq
22386	26161	S2, Gene3, M, Gene5, N	CK/CH/IBTZ/2012 (QX-type)	SC021202 (YN-type)	RDP, Bootscan, GENECONV, MaxChi, Chimaera, 3Seq

Only transferred gene fragments where p ≤ 1 × 10⁻¹² are included in the table. “Genes” indicates the coding sequences contained within the fragment introduced by recombination. The major sequence is the sequence most closely related to that surrounding the transferred fragment. The minor sequence is most closely related to the transferred fragment in the recombinant

ISSN: 1743-422X