Table 1 Sequence identity of the genome and individual genes of strain GD to other IBV strains
Strain | Genome | S1 | S2 | 3a | 3b | E | M | 5a | 5b | N |
|---|---|---|---|---|---|---|---|---|---|---|
YN | 90.0 | 82.7 (83.4) | 93.4 (94.7) | 92.0 (87.9) | 75.1 (87.1) | 90.2 (91.7) | 94.8 (97.3) | 95.5 (97.0) | 92.4 (90.4) | 87.6 (91.5) |
YX10 | 94.4 | 78.3 (80.1) | 94.3 (94.9) | 90.2 (82.8) | 82.0 (58.1) | 92.7 (91.7) | 94.7 (97.3) | 82.8 (78.8) | 92.4 (86.7) | 88.8 (90.7) |
DY07 | 94.1 | 78.1 (79.5) | 94.5 (95.0) | 90.2 (82.8) | 79.2 (58.1) | 93.0 (92.7) | 94.5 (97.3) | 89.9 (89.4) | 97.2 (94.0) | 93.8 (96.3) |
Sczy3 | 94.1 | 78.2 (79.9) | 94.4 (95.0) | 89.7 (81.0) | 75.0 (58.1) | 93.0 (92.7) | 94.4 (96.9) | 84.3 (81.8) | 92.8 (90.4) | 93.1 (95.1) |
CK/CH/SD/121220 | 94.2 | 79.1 (78.8) | 94.3 (94.9) | 90.2 (81.0) | 76.3 (61.3) | 93.3 (92.7) | 94.1 (97.3) | 91.4 (87.9) | 94.4 (92.8) | 93.9 (96.3) |
SDIB821/2012 | 94.3 | 78.7 (79.5) | 94.4 (95.0) | 90.2 (81.0) | 76.8 (58.1) | 92.7 (91.7) | 94.0 (96.9) | 84.8 (81.8) | 95.6 (92.8) | 95.0 (96.3) |
CQ04-1 | 93.3 | 82.4 (83.2) | 94.4 (95.5) | 92.0 (87.9) | 76.6 (91.9) | 91.7 (90.8) | 93.7 (93.4) | 93.9 (92.4) | 92.0 (89.2) | 87.3 (90.0) |
SC021202 | 90.1 | 82.9 (83.7) | 93.4 (94.9) | 92.0 (87.9) | 82.1 (83.9) | 89.9 (91.7) | 93.4 (97.8) | 96.0 (97.0) | 92.0 (89.2) | 87.7 (91.5) |
SAIBK | 89.3 | 82.3 (83.8) | 93.3 (94.7) | 92.0 (87.9) | 82.1 (80.6) | 89.0 (90.8) | 93.4 (96.9) | 85.9 (83.3) | 92.0 (89.2) | 87.7 (90.5) |
A2 | 90.1 | 82.4 (82.2) | 91.6 (94.1) | 87.9 (86.2) | 87.9 (59.7) | 89.9 (91.7) | 93.1 (93.4) | 87.4 (84.8) | 98.0 (96.4) | 92.1 (93.4) |
TW2575/98 | 88.0 | 98.3 (96.8) | 91.2 (93.9) | 87.9 (82.8) | 77.3 (58.1) | 88.1 (90.8) | 92.8 (94.7) | 81.8 (81.8) | 91.6 (88.0) | 88.7 (91.0) |
LX4 | 90.0 | 78.7 (80.0) | 89.7 (93.9) | 90.8 (82.8) | 82.6 (56.5) | 90.2 (92.7) | 92.8 (93.8) | 87.4 (86.4) | 96.0 (96.4) | 92.4 (96.1) |
4/91 | 86.2 | 77.3 (76.7) | 85.3 (89.2) | 87.4 (82.8) | 87.4 (64.5) | 85.2 (87.7) | 90.7 (92.5) | 86.9 (78.8) | 92.8 (90.4) | 90.7 (93.9) |
FL18228 | 86.7 | 82.0 (82.3) | 86.2 (89.6) | 84.5 (82.8) | 82.1 (59.7) | 87.0 (84.0) | 90.6 (94.2) | 81.8 (77.3) | 93.2 (92.8) | 90.0 (93.9) |
Ck/CH/LDL/101212 | 86.3 | 81.2 (81.5) | 85.5 (88.9) | 83.9 (81.0) | 83.9 (66.1) | 85.3 (82.6) | 90.6 (93.8) | 83.8 (80.3) | 92.0 (90.4) | 93.5 (94.9) |
Ck/CH/LNM/091017 | 86.5 | 81.2 (81.5) | 85.4 (88.9) | 83.9 (81.0) | 78.8 (66.1) | 85.3 (84.3) | 90.6 (93.8) | 83.3 (78.8) | 92.0 (90.4) | 89.4 (93.4) |
H120 | 86.5 | 81.2 (81.5) | 85.4 (88.6) | 83.9 (81.0) | 76.1 (66.1) | 85.3 (82.6) | 90.6 (93.8) | 83.3 (78.8) | 92.0 (90.4) | 89.3 (93.2) |
H52 | 86.4 | 81.2 (81.4) | 85.4 (88.4) | 83.3 (79.3) | 92.9 (67.7) | 85.6 (85.3) | 90.3 (93.8) | 82.8 (78.8) | 90.4 (86.7) | 88.7 (92.9) |
Conn46 1996. | 86.7 | 81.7 (82.0) | 86.2 (90.0) | 85.1 (84.5) | 76.8 (67.7) | 86.3 (83.2) | 90.2 (93.3) | 82.3 (77.3) | 93.2 (92.8) | 90.1 (93.9) |
M41 | 86.2 | 81.6 (81.0) | 85.5 (88.3) | 85.1 (79.3) | 90.8 (67.7) | 85.9 (85.3) | 90.1 (94.2) | 79.8 (74.2) | 91.2 (88.0) | 88.6 (92.2) |
Georgia 1998 Vaccine | 84.6 | 61.6 (49.8) | 74.7 (74.8) | 85.6 (82.8) | 81.5 (58.1) | 86.9 (87.2) | 90.1 (93.8) | 81.8 (75.8) | 93.2 (92.8) | 90.0 (93.7) |
Beaudette | 86.5 | 81.7 (81.7) | 85.2 (87.9) | 86.2 (84.5) | 86.2 (67.7) | 85.9 (84.4) | 90.1 (92.9) | 83.3 (77.3) | 92.8 (92.8) | 89.2 (91.5) |
Gray | 86.7 | 78.7 (78.8) | 86.2 (86.9) | 83.9 (81.0) | 82.0 (66.1) | 85.7 (83.2) | 90.1 (65.2) | 83.8 (80.3) | 92.0 (90.4) | 88.9 (84.1) |
Ck/CH/LHLJ/100902 | 86.5 | 81.6 (81.0) | 85.5 (88.6) | 85.1 (79.3) | 85.1 (67.7) | 86.2 (86.2) | 90.0 (93.8) | 80.3 (74.2) | 90.8 (88.0) | 88.4 (92.0) |
Holte | 86.6 | 79.2 (76.3) | 85.3 (85.1) | 81.6 (79.3) | 77.2 (56.5) | 86.6 (84.1) | 90.0 (91.9) | 83.8 (80.3) | 92.0 (90.4) | 88.5 (91.2) |
Ck/CH/LHLJ/07VII | 86.3 | 80.4 (79.3) | 85.5 (88.4) | 81.9 (71.9) | 81.9 (67.7) | 85.9 (85.3) | 89.8 (93.4) | 80.3 (74.2) | 90.8 (88.0) | 88.8 (92.7) |
BJ | 89.2 | 78.1 (79.1) | 85.3 (88.9) | 89.1 (86.2) | 89.1 (66.1) | 85.9 (86.2) | 89.8 (91.6) | 82.8 (83.3) | 89.4 (86.6) | 92.5 (94.1) |
Delaware072 | 84.7 | 62.0 (51.1) | 74.7 (67.9) | 85.1 (81.0) | 81.5 (67.7) | 85.6 (83.5) | 89.5 (93.8) | 81.3 (77.3) | 92.4 (91.6) | 89.0 (91.2) |
Ck/CH/LHB/100801 | 87.5 | 87.7 (85.7) | 92.0 (94.5) | 86.2 (87.9) | 86.2 (61.3) | 87.2 (88.1) | 89.5 (91.6) | 83.3 (81.8) | 91.2 (90.4) | 87.4 (89.5) |
Arkansas Vaccine | 86.5 | 78.3 (79.0) | 86.2 (88.9) | 87.4 (82.8) | 87.4 (66.1) | 86.0 (82.2) | 89.4 (92.5) | 82.3 (77.3) | 92.4 (90.4) | 89.7 (93.2) |
KM91 | 87.5 | 83.7 (84.2) | 92.3 (94.4) | 82.2 (67.2) | 78.3 (87.1) | 89.6 (89.0) | 88.9 (91.2) | 80.8 (74.2) | 92.0 (91.6) | 90.2 (93.7) |
ITA/90254/2005 | 87.9 | 78.8 (79.7) | 91.2 (94.4) | 86.8 (84.5) | 77.3 (64.5) | 86.5 (85.3) | 88.8 (92.0) | 87.4 (83.3) | 90.0 (86.7) | 91.0 (93.7) |
SNU8067 | 86.8 | 77.2 (77.1) | 91.5 (94.1) | 82.2 (79.3) | 89.1 (61.3) | 88.0 (86.1) | 88.6 (90.3) | 80.8 (74.2) | 91.2 (88.0) | 89.3 (93.9) |
GX-NN09032 | 91.7 | 66.8 (60.2) | 74.8 (73.8) | 83.9 (77.6) | 82.0 (71.0) | 85.9 (82.6) | 88.2 (89.4) | 90.9 (87.9) | 91.2 (86.7) | 87.3 (90.5) |