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Table 1 Sequence identity of the genome and individual genes of strain GD to other IBV strains

From: Characterization and analysis of an infectious bronchitis virus strain isolated from southern China in 2013

Strain Genome S1 S2 3a 3b E M 5a 5b N
YN 90.0 82.7 (83.4) 93.4 (94.7) 92.0 (87.9) 75.1 (87.1) 90.2 (91.7) 94.8 (97.3) 95.5 (97.0) 92.4 (90.4) 87.6 (91.5)
YX10 94.4 78.3 (80.1) 94.3 (94.9) 90.2 (82.8) 82.0 (58.1) 92.7 (91.7) 94.7 (97.3) 82.8 (78.8) 92.4 (86.7) 88.8 (90.7)
DY07 94.1 78.1 (79.5) 94.5 (95.0) 90.2 (82.8) 79.2 (58.1) 93.0 (92.7) 94.5 (97.3) 89.9 (89.4) 97.2 (94.0) 93.8 (96.3)
Sczy3 94.1 78.2 (79.9) 94.4 (95.0) 89.7 (81.0) 75.0 (58.1) 93.0 (92.7) 94.4 (96.9) 84.3 (81.8) 92.8 (90.4) 93.1 (95.1)
CK/CH/SD/121220 94.2 79.1 (78.8) 94.3 (94.9) 90.2 (81.0) 76.3 (61.3) 93.3 (92.7) 94.1 (97.3) 91.4 (87.9) 94.4 (92.8) 93.9 (96.3)
SDIB821/2012 94.3 78.7 (79.5) 94.4 (95.0) 90.2 (81.0) 76.8 (58.1) 92.7 (91.7) 94.0 (96.9) 84.8 (81.8) 95.6 (92.8) 95.0 (96.3)
CQ04-1 93.3 82.4 (83.2) 94.4 (95.5) 92.0 (87.9) 76.6 (91.9) 91.7 (90.8) 93.7 (93.4) 93.9 (92.4) 92.0 (89.2) 87.3 (90.0)
SC021202 90.1 82.9 (83.7) 93.4 (94.9) 92.0 (87.9) 82.1 (83.9) 89.9 (91.7) 93.4 (97.8) 96.0 (97.0) 92.0 (89.2) 87.7 (91.5)
SAIBK 89.3 82.3 (83.8) 93.3 (94.7) 92.0 (87.9) 82.1 (80.6) 89.0 (90.8) 93.4 (96.9) 85.9 (83.3) 92.0 (89.2) 87.7 (90.5)
A2 90.1 82.4 (82.2) 91.6 (94.1) 87.9 (86.2) 87.9 (59.7) 89.9 (91.7) 93.1 (93.4) 87.4 (84.8) 98.0 (96.4) 92.1 (93.4)
TW2575/98 88.0 98.3 (96.8) 91.2 (93.9) 87.9 (82.8) 77.3 (58.1) 88.1 (90.8) 92.8 (94.7) 81.8 (81.8) 91.6 (88.0) 88.7 (91.0)
LX4 90.0 78.7 (80.0) 89.7 (93.9) 90.8 (82.8) 82.6 (56.5) 90.2 (92.7) 92.8 (93.8) 87.4 (86.4) 96.0 (96.4) 92.4 (96.1)
4/91 86.2 77.3 (76.7) 85.3 (89.2) 87.4 (82.8) 87.4 (64.5) 85.2 (87.7) 90.7 (92.5) 86.9 (78.8) 92.8 (90.4) 90.7 (93.9)
FL18228 86.7 82.0 (82.3) 86.2 (89.6) 84.5 (82.8) 82.1 (59.7) 87.0 (84.0) 90.6 (94.2) 81.8 (77.3) 93.2 (92.8) 90.0 (93.9)
Ck/CH/LDL/101212 86.3 81.2 (81.5) 85.5 (88.9) 83.9 (81.0) 83.9 (66.1) 85.3 (82.6) 90.6 (93.8) 83.8 (80.3) 92.0 (90.4) 93.5 (94.9)
Ck/CH/LNM/091017 86.5 81.2 (81.5) 85.4 (88.9) 83.9 (81.0) 78.8 (66.1) 85.3 (84.3) 90.6 (93.8) 83.3 (78.8) 92.0 (90.4) 89.4 (93.4)
H120 86.5 81.2 (81.5) 85.4 (88.6) 83.9 (81.0) 76.1 (66.1) 85.3 (82.6) 90.6 (93.8) 83.3 (78.8) 92.0 (90.4) 89.3 (93.2)
H52 86.4 81.2 (81.4) 85.4 (88.4) 83.3 (79.3) 92.9 (67.7) 85.6 (85.3) 90.3 (93.8) 82.8 (78.8) 90.4 (86.7) 88.7 (92.9)
Conn46 1996. 86.7 81.7 (82.0) 86.2 (90.0) 85.1 (84.5) 76.8 (67.7) 86.3 (83.2) 90.2 (93.3) 82.3 (77.3) 93.2 (92.8) 90.1 (93.9)
M41 86.2 81.6 (81.0) 85.5 (88.3) 85.1 (79.3) 90.8 (67.7) 85.9 (85.3) 90.1 (94.2) 79.8 (74.2) 91.2 (88.0) 88.6 (92.2)
Georgia 1998 Vaccine 84.6 61.6 (49.8) 74.7 (74.8) 85.6 (82.8) 81.5 (58.1) 86.9 (87.2) 90.1 (93.8) 81.8 (75.8) 93.2 (92.8) 90.0 (93.7)
Beaudette 86.5 81.7 (81.7) 85.2 (87.9) 86.2 (84.5) 86.2 (67.7) 85.9 (84.4) 90.1 (92.9) 83.3 (77.3) 92.8 (92.8) 89.2 (91.5)
Gray 86.7 78.7 (78.8) 86.2 (86.9) 83.9 (81.0) 82.0 (66.1) 85.7 (83.2) 90.1 (65.2) 83.8 (80.3) 92.0 (90.4) 88.9 (84.1)
Ck/CH/LHLJ/100902 86.5 81.6 (81.0) 85.5 (88.6) 85.1 (79.3) 85.1 (67.7) 86.2 (86.2) 90.0 (93.8) 80.3 (74.2) 90.8 (88.0) 88.4 (92.0)
Holte 86.6 79.2 (76.3) 85.3 (85.1) 81.6 (79.3) 77.2 (56.5) 86.6 (84.1) 90.0 (91.9) 83.8 (80.3) 92.0 (90.4) 88.5 (91.2)
Ck/CH/LHLJ/07VII 86.3 80.4 (79.3) 85.5 (88.4) 81.9 (71.9) 81.9 (67.7) 85.9 (85.3) 89.8 (93.4) 80.3 (74.2) 90.8 (88.0) 88.8 (92.7)
BJ 89.2 78.1 (79.1) 85.3 (88.9) 89.1 (86.2) 89.1 (66.1) 85.9 (86.2) 89.8 (91.6) 82.8 (83.3) 89.4 (86.6) 92.5 (94.1)
Delaware072 84.7 62.0 (51.1) 74.7 (67.9) 85.1 (81.0) 81.5 (67.7) 85.6 (83.5) 89.5 (93.8) 81.3 (77.3) 92.4 (91.6) 89.0 (91.2)
Ck/CH/LHB/100801 87.5 87.7 (85.7) 92.0 (94.5) 86.2 (87.9) 86.2 (61.3) 87.2 (88.1) 89.5 (91.6) 83.3 (81.8) 91.2 (90.4) 87.4 (89.5)
Arkansas Vaccine 86.5 78.3 (79.0) 86.2 (88.9) 87.4 (82.8) 87.4 (66.1) 86.0 (82.2) 89.4 (92.5) 82.3 (77.3) 92.4 (90.4) 89.7 (93.2)
KM91 87.5 83.7 (84.2) 92.3 (94.4) 82.2 (67.2) 78.3 (87.1) 89.6 (89.0) 88.9 (91.2) 80.8 (74.2) 92.0 (91.6) 90.2 (93.7)
ITA/90254/2005 87.9 78.8 (79.7) 91.2 (94.4) 86.8 (84.5) 77.3 (64.5) 86.5 (85.3) 88.8 (92.0) 87.4 (83.3) 90.0 (86.7) 91.0 (93.7)
SNU8067 86.8 77.2 (77.1) 91.5 (94.1) 82.2 (79.3) 89.1 (61.3) 88.0 (86.1) 88.6 (90.3) 80.8 (74.2) 91.2 (88.0) 89.3 (93.9)
GX-NN09032 91.7 66.8 (60.2) 74.8 (73.8) 83.9 (77.6) 82.0 (71.0) 85.9 (82.6) 88.2 (89.4) 90.9 (87.9) 91.2 (86.7) 87.3 (90.5)
  1. Nucleotide (amino acid) sequence identity (%) are shown