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Table 3 Predicted promoter sequences found in intergenic regions in the ØVC8 genome using the PromoterHunter program

From: Genetic characterization of ØVC8 lytic phage for Vibrio cholerae O1

Promoter

ORF

Position

5'

- 35

- 10

3'

1

1

39373…39422

ATGTAACGGT-GGTTGACA-CAGAGCCAGAGGTGTG-CTATAAT-GGAGGTAAG

2

8

5551…5601

AGAGTCCGGA-AACGGGTA-GCTCAAATCGATATTA-ACAATCT-TTTAGGAAAA

3

9

6593…6641

GATTAGGG-TGTGTCGACA-TCGACACACCTCTTT-TTATTGG-AGAATACAT

4

22

21652…21701

AACCCTTGA-TTTTTTACC-GCACCGTGAAGGGTG-CAAAGAG-GCAGGAGAAA

5

27

24113…24153

AAGAATAGGG-TGTCGACG-TCGACACCCACAAC-ACACAAGAG-GAAACACA

6

31

29193…29235

GGGGTGTCGA-CGTCGACA-CCCCCTCTTTACTGG-AGAGACT-TAA

7

32

30075…30118

C-AAGTAACG-AAGCAACTAGTAACGAAA-TAACTGT-CAATGGAGAC

8

34

32127…32178

CCAACTAGCC-TCTTGGGT-TGGTGCAGTTCTTCAAC-CTAACCC-AATGCAAGCA

9

36

33231…33280

TGTCGCCCAC-CCTTTAGC-TATCCAACCAAACCA-ATCGTAG-GAGCACGACG

10

40

35422…35472

CTGCAATAGA-GCTTGACG-CGCGCCCATATGTATGTT-ATAATAG-GTGTGTCG

11

42

36449…36500

TTGTCGCAAT-CTTTTATT-TGGGGGAGGGCGTGTCC-CTCCTGT-CTCAACTAGT

12

44

37139…37158

CAATGGTGTC-GACGGTCG-ACACACCCCGAACAC-GTAAGGA-GTCCGAA

13

46

38150…38200

TTGCAAGGGT-ACTTGACA-GGCATCCGAAAGTGTG-TTAAAAT-AAGAACACAA

14

47

38040…38092

CTTGCTTGCT-GACCACCA-CTCTGGTGTTTAGTTCGT-AGCTGCT-TGTGCTGCTC

15

48

39031…38080

TCGGTCACAA-AATGTTCG-AAATGTGACAAAACT-CACATCT-TTGACACACG

  1. Sequences in bold correspond to −10 and −35 regions