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Table 2 Putative open reading frames in the ØVC8 genome and their assigned functions

From: Genetic characterization of ØVC8 lytic phage for Vibrio cholerae O1

    Gene product      
ORF Nucleotide position Size a Molecular mass Presumed function Related phage or organism GenBank accession no BLAST X
  Start End (aa) (kDa)     % Identity e-value
1 1 222 73 13.6 Hypothetical protein Vibrio phage VP2 YP_052974 95 1 e-32
2 128 739 203 22.9 Terminase small subunit Vibrio phage VP5 YP_053007 94 4 e-131
3 726 2432 568 65.3 Terminase large subunit Pelagibacter phage HTVC010P YP_007517700 32 4 e-41
4 2443 4086 547 61.7 Head-to-tail connecting protein Pelagibacter phage HTVC010P YP_007517703 32 4 e-62
5 4086 4313 75 8 Hypothetical protein Vibrio phage VP2 YP_052976 92 7 e-26
6 4326 4583 85 9.9 Hypothetical protein Vibrio phage VP2 YP_052977 95 2 e-18
7 4552 5439 295 31.8 Hypothetical protein Pelagibacter phage HTVC010P YP_007517705 23 6 e-14
8 5607 6575 322 36.1 Structural protein Pelagibacter phage HTVC010P YP_007517707 24 1 e-21
9 6642 6911 89 9.2 Hypothetical protein Vibrio phage VP2 YP_052980 100 7 e-35
10 6926 7774 282 31.1 Hypothetical protein Vibrio phage VP5 YP_053013 91 1 e-46
11 7771 8136 121 13.4 Hypothetical protein Vibrio phage VP2 YP_052982 96 1 e-59
12 8138 8611 157 18.2 Hypothetical protein Vibrio phage KVP40 NP_899538 31 2 e-20
13 8604 8906 100 10.5 Hypothetical protein Vibrio phage VP2 YP_052983 97 1 e-51
14 8930 11155 741 74.1 Tail protein Vibrio phage VP5 YP_024980 90 0
15 11164 12948 594 65.5 Structural protein Vibrio phage VP5 YP_024422 98 0
16 12951 13349 132 13.9 Hypothetical protein Vibrio phage VP2 YP_052984 97 1 e-41
17 13346 15430 694 76.8 Structural protein Vibrio phage VP2 YP_052985 95 0
18 15430 16602 390 41.5 Hypothetical protein Vibrio phage VP5 YP_053019 95 2 e-151
19 16604 18952 782 87.2 Structural protein Escherichia phage phiV10 YP_512274 27 6 e-68
20 18956 19984 342 36.6 Tail fiber Vibrio phage VP5 YP_053020 96 2 e-162
21 20009 21322 437 44.9 Outer capsid protein Vibrio phage VP2 YP_024425 31 1 e -35
22 21350 21646 98 11.2 Hypothetical protein Pseudomonas phage PPpW-3 YP_008873205 45 9 e-16
23 21723 22160 145 11.2 Hypothetical protein Vibrio phage VP2 YP_053022 96 2 e-79
24 22150 22308 52 11.2 Hypothetical protein Vibrio phage VP2 YP_052988 81 1 e-19
25 22305 22817 170 19.2 Metal dependent phosphohydrolase Vibrio phage VP5 YP_024983 94 7 e-116
26 22819 23079 86 9.8 Hypothetical protein Vibrio phage VP5 YP_053024 96 2 e-28
27 23081 24112 343 38.1 Adenylosuccinate synthetase Solibacter usitatus YP_827486 33 1 e-31
28 24154 26442 762 87 Integrase Vibrio phage VP2 YP_024428 99 0
29 26432 28333 633 71.2 DNA Polymerase I α-proteobacteria phage ØJL001 YP_223952 26 9 e-40
30 28330 28680 116 13.5 Hypothetical protein Enterococcus phage EFDG1 AJP61480 53 8 e-14
31 28677 29192 171 19.2 ssDNA binding protein Vibrio phage VP2 YP_024430 93 8 e-95
32 29253 30068 271 30.3 Hypothetical protein Pseudomonas phage F8 YP_001294468 32 1 e-23
33 30119 30586 155 17.8 Hypothetical protein Vibrio phage VP2 YP_052991 98 5 e-108
34 30649 32118 489 55.4 Superfamily II DNA/RNA helicases Thermoanaerobacterium phage THSA-485A YP_006546319 36 2 e-77
35 32188 32538 116 12.6 Hypothetical protein Vibrio phage VP5 YP_053027 84 1 e-26
36 32538 33230 230 24.5 Hypothetical protein Vibrio phage CJY AIZ01434 97 3 e-111
37 33381 33845 154 17.3 Hypothetical protein Vibrio phage VP2 YP_052993 84 6 e-93
38 33842 34252 136 15.7 Hypothetical protein Vibrio phage VP2 YP_052994 78 2 e-64
39 34254 34613 119 13.7 Hypothetical protein Vibrio phage VP5 YP_053031 67 4 e-44
40 34621 35421 266 30.2 Hypothetical protein Vibrio phage VP2 YP_052996 98 2 e-101
41 35490 35975 161 18.1 Hypothetical protein Vibrio phage VP2 YP_052977 96 5 e-85
42 35985 36437 150 16 Hypothetical protein Vibrio phage VP5 YP_053036 84 2 e-61
43 36543 36836 97 11 Hypothetical protein Vibrio phage VP2 YP_053001 95 1 e-46
44 36848 37138 96 10.7 Hypothetical protein Vibrio phage VP2 YP_053002 79 5 e-36
45 37245 37490 81 9.2 Hypothetical protein Vibrio phage VP2 YP_053003 74 1 e-26
46 37495 38094 199 22.1 Hypothetical protein Vibrio phage VP5 YP_053042 91 5 e-93
47 38093 38788 231 26.9 Hypothetical protein Vibrio phage VP2 YP_053005 93 1 e-50
48 38669 39028 121 13.6 Hypothetical protein Unknown --- --- ---
  1. aPredicted using the Compute pI/Mw tool, Swiss Institute of Bioinformatics