Molecular characterisation of a novel recombinant Ribgrass mosaic virus strain FSHS

Table 1 Comparison of nucleotide and amino acid sequences of different ORFs of recombinant RMV strain FSHS (accession JQ319720.1) with representative viruses of RMV, TVCV and YOMV clusters of subgroup 3 tobamoviruses

	Virus/sequence id	1	2	3	4	5	6	1	2	3	4	5	6
		ORF 1						ORF 2
1	RMV strain FSHS (JQ319720.1)	100	96	91	91	85	79	100	97	91	92	86	80	1
2	RMV strain NZ-439 (HQ667978.1)	98	100	89	89	87	79	99	100	90	91	87	80	2
3	RMV strain Kons. 1105 (HQ667979.1)	97	96	100	91	86	79	98	97	100	92	86	80	3
4	RMV strain Actinidia-AC (GQ401365.1)	97	96	98	100	86	79	98	97	98	100	86	80	4
5	TVCV strain OSU (U03387.1)	94	95	94	94	100	80	94	95	94	94	100	82	5
6	YoMV (U30944.1)	88	88	88	88	87	100	89	89	90	90	89	100	6
		ORF 3						ORF 4
1	RMV strain FSHS (JQ319720.1)	100	99	93	93	86	79	100	99	96	96	88	83	1
2	RMV strain NZ-439 (HQ667978.1)	99	100	94	93	87	79	100	100	97	96	89	83	2
3	RMV strain Kons. 1105 (HQ667979.1)	98	99	100	92	86	79	99	99	100	96	90	85	3
4	RMV strain Actinidia-AC (GQ401365.1)	97	97	97	100	87	79	99	99	99	100	89	83	4
5	TVCVstrain OSU (U03387.1)	87	88	87	88	100	81	91	91	92	90	100	86	5
6	YoMV (U30944.1)	80	81	80	82	83	100	89	89	89	88	88	100	6
		1	2	3	4	5	6	1	2	3	4	5	6

RMV Ribgrass mosaic virus, TVCV Turnip vein-clearing virus, YoMV Youcai mosaic virus, Normal and bold numerals indicate nt and aa percentage identities respectively. All the underlined values represent percentage identities of RMV strain FSHS with members of TVCV and YoMV clusters; ORF 1: Replicase component; ORF 2: Replicase read-through component; ORF 3: Movement protein; ORF 4: Coat protein

ISSN: 1743-422X