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Table 1 Comparison of nucleotide and amino acid sequences of different ORFs of recombinant RMV strain FSHS (accession JQ319720.1) with representative viruses of RMV, TVCV and YOMV clusters of subgroup 3 tobamoviruses

From: Molecular characterisation of a novel recombinant Ribgrass mosaic virus strain FSHS

  Virus/sequence id 1 2 3 4 5 6 1 2 3 4 5 6  
   ORF 1 ORF 2  
1 RMV strain FSHS (JQ319720.1) 100 96 91 91 85 79 100 97 91 92 86 80 1
2 RMV strain NZ-439 (HQ667978.1) 98 100 89 89 87 79 99 100 90 91 87 80 2
3 RMV strain Kons. 1105 (HQ667979.1) 97 96 100 91 86 79 98 97 100 92 86 80 3
4 RMV strain Actinidia-AC (GQ401365.1) 97 96 98 100 86 79 98 97 98 100 86 80 4
5 TVCV strain OSU (U03387.1) 94 95 94 94 100 80 94 95 94 94 100 82 5
6 YoMV (U30944.1) 88 88 88 88 87 100 89 89 90 90 89 100 6
   ORF 3 ORF 4  
1 RMV strain FSHS (JQ319720.1) 100 99 93 93 86 79 100 99 96 96 88 83 1
2 RMV strain NZ-439 (HQ667978.1) 99 100 94 93 87 79 100 100 97 96 89 83 2
3 RMV strain Kons. 1105 (HQ667979.1) 98 99 100 92 86 79 99 99 100 96 90 85 3
4 RMV strain Actinidia-AC (GQ401365.1) 97 97 97 100 87 79 99 99 99 100 89 83 4
5 TVCVstrain OSU (U03387.1) 87 88 87 88 100 81 91 91 92 90 100 86 5
6 YoMV (U30944.1) 80 81 80 82 83 100 89 89 89 88 88 100 6
   1 2 3 4 5 6 1 2 3 4 5 6  
  1. RMV Ribgrass mosaic virus, TVCV Turnip vein-clearing virus, YoMV Youcai mosaic virus, Normal and bold numerals indicate nt and aa percentage identities respectively. All the underlined values represent percentage identities of RMV strain FSHS with members of TVCV and YoMV clusters; ORF 1: Replicase component; ORF 2: Replicase read-through component; ORF 3: Movement protein; ORF 4: Coat protein