Molecular characterization of human coronaviruses and their circulation dynamics in Kenya, 2009–2012

Table 1 Nucleotide sequence homology of the Kenyan HCoV isolates

	NC_005147_OC43	NC_006577_HKU1	NC_002645_229E	NC_005831_NL63	HCoV_016_2010	HCoV_018_2010	HCoV017_2010	HCoV_019_2010	HCoV_014_2010	HCoV_012_2010	HCoV_007_2010	HCoV_013_2010	HCoV_001_2010	HCoV_010_2009	HCoV_008_2009	HCoV_002_2012	HCoV_006_2009	HCoV_009_2010	HCoV_005_2009	HCoV_011_2009	HCoV_015_2009	HCoV_004_2012
NC_005147_OC43
NC_006577_HKU1	81
NC_002645_229E	59	62
NC_005831_NL63	60	61	75
HCoV_016_2010	100	81	59	60
HCoV_018_2010	99	82	59	60	99
HCoV_017_2010	99	82	59	60	99	100
HCoV_019_2010	99	82	59	60	99	100	100
HCoV_14_2010	99	82	59	60	99	100	100	100
HCoV_012_2010	99	82	59	60	99	100	100	100	100
HCoV_007_2010	99	82	59	60	99	100	100	100	100	100
HCoV_013_2010	99	82	59	60	99	100	100	100	100	100	100
HCoV_001_2010	80	97	61	60	80	81	81	81	81	81	81	81
HCoV_010_2009	81	99	63	61	81	82	82	82	82	82	82	82	96
HCoV_008_2009	81	99	62	61	81	81	81	81	81	81	81	81	97	99
HCoV_002_2012	59	62	99	75	59	59	59	59	59	59	59	59	62	63	63
HCoV_006_2009	59	62	99	75	59	59	59	59	59	59	59	59	62	63	63	100
HCoV_009_2010	59	62	99	75	59	59	59	59	59	59	59	59	62	63	63	100	100
HCoV_005_2009	60	60	76	99	60	60	60	60	60	60	60	60	60	61	61	76	76	76
HCoV_011_2009	59	60	75	98	59	60	60	60	60	60	60	60	59	60	60	75	75	75	99
HCoV_015_2009	60	60	76	99	60	60	60	60	60	60	60	60	60	61	61	76	76	76	100	99
HCoV_004_2012	60	60	76	99	60	60	60	60	60	60	60	60	60	61	61	76	76	76	100	99	100
HCoV_003_2009	60	60	76	99	60	60	60	60	60	60	60	60	60	61	61	76	76	76	100	99	100	100

ISSN: 1743-422X