Skip to main content

Table 1 Nucleotide sequence homology of the Kenyan HCoV isolates

From: Molecular characterization of human coronaviruses and their circulation dynamics in Kenya, 2009–2012

  NC_005147_OC43 NC_006577_HKU1 NC_002645_229E NC_005831_NL63 HCoV_016_2010 HCoV_018_2010 HCoV017_2010 HCoV_019_2010 HCoV_014_2010 HCoV_012_2010 HCoV_007_2010 HCoV_013_2010 HCoV_001_2010 HCoV_010_2009 HCoV_008_2009 HCoV_002_2012 HCoV_006_2009 HCoV_009_2010 HCoV_005_2009 HCoV_011_2009 HCoV_015_2009 HCoV_004_2012 HCoV_003_2009
NC_005147_OC43                        
NC_006577_HKU1 81                       
NC_002645_229E 59 62                      
NC_005831_NL63 60 61 75                     
HCoV_016_2010 100 81 59 60                    
HCoV_018_2010 99 82 59 60 99                   
HCoV_017_2010 99 82 59 60 99 100                  
HCoV_019_2010 99 82 59 60 99 100 100                 
HCoV_14_2010 99 82 59 60 99 100 100 100                
HCoV_012_2010 99 82 59 60 99 100 100 100 100               
HCoV_007_2010 99 82 59 60 99 100 100 100 100 100              
HCoV_013_2010 99 82 59 60 99 100 100 100 100 100 100             
HCoV_001_2010 80 97 61 60 80 81 81 81 81 81 81 81            
HCoV_010_2009 81 99 63 61 81 82 82 82 82 82 82 82 96           
HCoV_008_2009 81 99 62 61 81 81 81 81 81 81 81 81 97 99          
HCoV_002_2012 59 62 99 75 59 59 59 59 59 59 59 59 62 63 63         
HCoV_006_2009 59 62 99 75 59 59 59 59 59 59 59 59 62 63 63 100        
HCoV_009_2010 59 62 99 75 59 59 59 59 59 59 59 59 62 63 63 100 100       
HCoV_005_2009 60 60 76 99 60 60 60 60 60 60 60 60 60 61 61 76 76 76      
HCoV_011_2009 59 60 75 98 59 60 60 60 60 60 60 60 59 60 60 75 75 75 99     
HCoV_015_2009 60 60 76 99 60 60 60 60 60 60 60 60 60 61 61 76 76 76 100 99    
HCoV_004_2012 60 60 76 99 60 60 60 60 60 60 60 60 60 61 61 76 76 76 100 99 100   
HCoV_003_2009 60 60 76 99 60 60 60 60 60 60 60 60 60 61 61 76 76 76 100 99 100 100  
  1. The numbers represent % nucleotide identities among the strains