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Table 3 GenBank Accession numbers used in the multiple alignments and phylogenetic analyses and of new sequences from this study

From: Discovery of variant infectious salmon anaemia virus (ISAV) of European genotype in British Columbia, Canada

Isolate or sample ID

Segment 6

Segment 8

Reference

VT02142012-120

JQ857081

JQ857078

This study

VT05252012-334H

KR998473

KR998431

This study

VT05252012-336G

KR998474

KR998432

This study

VT08092012-449

KR998475

KR998433

This study

ISAV2/89

DQ785246

  

96/09/734

DQ785250

DQ785278

 

96/09/768

DQ785249

DQ785277

 

96/09/1729

DQ785251

DQ785279

 

96/09/1712

DQ785245

DQ785273

 

93/09/2264

DQ785255

DQ785283

 

93/09/2163

AF427049

DQ785281

 

HPR4_Gullesfjord/94_Norway

AF302801

AF262384

 

HPR14_Vedoy/99_Norway

AF302803

AF262383

 

Glesvaer/90

AF220607

AF262382

 

90/09/400

DQ785248

DQ785276

 

H2143/89

DQ785247

DQ785275

 

SK779/06

EU118820

EU118822

 

NBISA01/98

AF283996

AF315063

 

VT03282012-222-C

KR998476

 

This study

VT03282012-222-E

KR998477

 

This study

VT05252012-337G

KR998478

 

This study

VT12212012-1068

KR998479

 

This study

ADL-PM3205

HQ011267

  

MR104/05

DQ108607

  

MR102/05

DQ108605

  

MR60/01

AY127876

  

ST25/97

AF364885

  

SF47/99

AF364888

  

97/09/615/97

DQ785252

  

MR46/99

AF364896

  

HI/87

AF364893

  

N32/98

AF364883

  

H36/98

AF302799

  

T22/96

AF364889

  

SF48/99

AF364878

  

H07/92

AF364898

  

SK-05/90/05

FM203287

  

MR105/05

DQ108608

  

MR52/00

AF364892

  

N09/93

AF364895

  

N49/99

AF364876

  

CH01/08

EU851043

  

H56/00

AF364880

  

ST21/96

AF364886

  

SK-05/144/05

FM203274

  

MR103/05

DQ108606

  

N75/03

AY971661

  

SF18/96

AF364869

  

ST27/97

AF364897

  

ST26/97

AF364879

  

H97/04

DQ108604

  

NT92B/04

AY973188

  

200304B

FM203244

  

1490/98

AF391126

  

6/91

AF364894

  

SF70/02

AY127880

  

F72d/02

AY971657

  

F72b/02

AY971656

  

SF63/01

AY127879

  

SF57/00

AF364890

  

SF54/00

AF364884

  

MR62/01

AY127878

  

MR61/01

AY127877

  

MR71/02

AY127881

  

MR14/95

AF364873

  

ISAV10/95

DQ785254

  

N5/89

AY127882

  

NS2003/03

AY973182

  

HPR7a_CGA/220-5/14

KJ944288

  

96/09/768

DQ785249

  

H17/96

AF364891

  

VT03202012-194

 

KR998434

This study

VT03202012-195

 

KR998435

This study

VT03202012-196

 

KR998436

This study

VT03202012-199

 

KR998437

This study

VT03202012-200

 

KR998438

This study

VT03202012-202

 

KR998439

This study

VT03202012-204A

 

KR998440

This study

VT03202012-215

 

KR998441

This study

VT03202012-216

 

KR998442

This study

VT03202012-217

 

KR998443

This study

VT03202012-218

 

KR998444

This study

VT03202012-219

 

KR998445

This study

VT05012012-308

 

KR998424

This study

VT05252012-336H

 

KR998425

This study

VT05252012-338G

 

KR998446

This study

VT06042012-341G

 

KR998447

This study

VT06042012-341H

 

KR998448

This study

VT06042012-343H

 

KR998449

This study

VT06042012-345H

 

KR998450

This study

VT08092012-402

 

KR998451

This study

VT08092012-406

 

KR998452

This study

VT08092012-419

 

KR998453

This study

VT08092012-420

 

KR998454

This study

VT08092012-421

 

KR998455

This study

VT08092012-423

 

KR998456

This study

VT08092012-425

 

KR998457

This study

VT08092012-431

 

KR998426

This study

VT08092012-433

 

KR998427

This study

VT08092012-434

 

KR998458

This study

VT08092012-446

 

KR998428

This study

VT08092012-447

 

KR998459

This study

VT08092012-450

 

KR998460

This study

VT08092012-451

 

KR998461

This study

VT08092012-465

 

KR998462

This study

VT08092012-466

 

KR998463

This study

VT08092012-468

 

KR998464

This study

VT08092012-476

 

KR998465

This study

VT08092012-478

 

KR998466

This study

VT08092012-481

 

KR998467

This study

VT06202012-379

 

KR998468

This study

VT06202012-380

 

KR998469

This study

VT06202012-387

 

KR998470

This study

VT06202012-388

 

KR998429

This study

VT06202012-391

 

KR998471

This study

VT01222013-03

 

KR998430

This study

VT06062013-60

 

KR998472

This study

Vir22_96/09/724

 

DQ785286

 

97/09/393

 

DQ785284

 

97/09/615

 

DQ785280

 

94/09/579

 

DQ785285

 

SF83/04

 

AY744395

 

Svolvaer/96

 

AF262381

 

Bremnes/98

 

AF262385

 

Brekke/98

 

AF262380

 

Eikelandsosen/89

 

AF262386

 

810/9/99

 

DQ022085

 

95

 

DQ785282

 

901

 

GU830910

 

752

 

GU830902

 

390/98

 

DQ003602

 

485/9/97

 

DQ003605

 

U5575-1

 

DQ003603

 

04-085-1

 

DQ058660

 

01-0973-3

 

DQ003607

 

02-1179-4

 

DQ003601

 

00-0593-1

 

DQ003606

 

02-0775-14

 

DQ003604

 

98-049-1

 

DQ003600

 

RPC/NB-280-2

 

AF312317

 

AF109304

 

AF109304

 

RPC/NB-877

 

AF312316

 

7833-1

 

AF312315

 

Fundy/97

 

AF262389

 

AF404340

 

AF404340

 

NB458

 

AY151798