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Fig. 5 | Virology Journal

Fig. 5

From: Discovery of variant infectious salmon anaemia virus (ISAV) of European genotype in British Columbia, Canada

Fig. 5

Alignment of ISAV segment 6 HPR nucleotide sequences containing the deletion. The alignment was adjusted manually as all known alignment software packages cannot align nucleotide sequences in such a delicate and complex area. Among 101 sequences analyzed, 39 of them are British Columbia isolates (ID starts with VT); the deletions of these 39 sequences are in three patterns. The first pattern is VT12212012-1068; the second pattern is VT03282012-222-C and VT02142012-90; the third pattern has 36 isolates and this pattern can be shown in VT05252012-337G. To save space in the figure, we used 6 sequences to represent the 36 sequences in this pattern

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Virology Journal

ISSN: 1743-422X