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Table 3 Detection results for clinical specimens

From: Simultaneous detection of eight immunosuppressive chicken viruses using a GeXP analyser-based multiplex PCR assay

Single infection Co-infection
  Number Rate (%) Real-time PCR/RT-PCR results Sequencing results Measures of agreement Kappa values   Number Rate (%) Real-time PCR/RT-PCR results Sequencing results Measures of agreement Kappa values
MDV 26 8.7 % 26 26 1 (p < 0.001) MDV + ALV-A 4 1.3 % 4 4 1 (p < 0.001)
ALV-A 6 2.0 % 6 6 1 (p < 0.001) MDV + ALV-J 25 8.3 % 25 25 1 (p < 0.001)
ALV-B 2 0.7 % 2 2 1 (p < 0.001) ALV-B + ALV-J 1 0.4 % 1 1 1 (p < 0.001)
ALV-J 21 7.0 % 21 21 1 (p < 0.001) MDV + ALV-J + REV 6 2 % 6 6 1 (p < 0.001)
REV 15 5 % 15 15 1 (p < 0.001) MDV + CIAV 5 1.6 % 5 5 1 (p < 0.001)
IBDV 17 5.7 % 17 17 1 (p < 0.001) MDV + REV 6 2 % 6 6 1 (p < 0.001)
CIAV 9 3 % 9 9 1 (p < 0.001) ALV-J + REV 3 1.5 % 3 3 1 (p < 0.001)
ARV 23 7.7 % 23 23 1 (p < 0.001) IBDV + ALV-J 5 1.6 % 5 5 1 (p < 0.001)
       MDV + CIAV + ALV-J 4 1.3 % 4 4 1 (p < 0.001)
       REV + ARV 3 1 % 3 3 1 (p < 0.001)
       ALV-J + ARV 6 2 % 6 6 1 (p < 0.001)
       ALV-J + IBDV 3 1 % 3 3 1 (p < 0.001)