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Table 2 Primer sets for genome amplification

From: Sequencing of emerging canine distemper virus strain reveals new distinct genetic lineage in the United States associated with disease in wildlife and domestic canine populations

Set

Forward

Reverse

Nucleotide positiona

F1/R1

GAGAACAAGGTCAGGGTTCAG

TTGCCGGCAGATCTTCTAAC

77–1231

F2/R2

TGCTATGGGAGTTGGTGTTG

TCTTCGCCAGAATCCTCAGT

1112–2273

F3/R3

CGAAGATGCTGACAGTCTCG

GAAAGCAGTTCTGTGCCTGTT

2169–3368

F4/R4

CAAAGTCACAAACACAACATGC

GGGACTGATGGTTGCAAGAC

3223–4372

F5/R5

TGTTACCCGCTCATGGAGAT

CCAAGTACTGGTGACTGGGTCT

4272–5433

F6/R6

GGTGCATTGGAATAGCCAGT

GCAGGTATCGGAGGCAATAA

5299–6530

F7/R7

CTTGGTGTCTGGGACGATG

GCTGCCGATGCAATAGATTT

6377–7578

F8/R8

GGTTACGGTTGCCACAAAAA

TCCATAATCTGGGATGTTTGAA

7389–8580

F9/R9

AAGAACGGAACAGTCCTTGG

TTGTGACTGGTGAGGTCAATG

8441–9685

F10/R10

TGCAAAGCTCACAGTGGTTC

CAGGCTCGCATTTTGTAGGT

9496–10696

F11/R11

GAGGACTCTCAGTTTGACCCTTA

CACATCCCGTGTCATAGCTG

10539–11777

F12/R12

CCGCATGCAGTAACATTTCA

GCCCATGAGTACACAGTTGCT

11626–12772

F13/R13

TACATCGGGTCCACAACAGA

CCTCATCACTTTCGCACAAA

12663–13821

F14/R14

CACGGACCCTCTCTTGACTC

CGAGGTAGGCCTCTGTTGAC

13683–14901

F15/R15

GCGACTGGGTTCAAGGATTTA

AGCAATGAATAGCAGAGGGTTAG

14797–15623

  1. aReference genome AF164967 (A75/17)