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Table 1 Amino acid substitutions within PPV6 VP1 and sample origin location

From: First identification of porcine parvovirus 6 in North America by viral metagenomic sequencing of serum from pigs infected with porcine reproductive and respiratory syndrome virus

 

PPV 6 isolate

BJ

BJ 2

JS

SC

TJ

KSU1

KSU2

KSU3

KSU4

KSU5

KSU6

KSU7

Origin

BJ

BJ

JS

SC

TJ

AZ

AZ

KS

NE

NE

IA

SD

Amino acid VP1

            

5

T

-

S

-

-

-

-

-

-

-

-

-

14

K

-

-

-

R

R

R

R

R

R

R

R

19

T

-

R

-

-

R

-

R

R

R

-

R

26

D

-

Y

-

Y

Y

Y

Y

Y

Y

Y

Y

38

S

-

-

-

F

L

-

L

L

L

-

L

52

N

-

T

-

T

T

T

T

T

T

T

T

58

P

-

-

-

-

-

-

-

-

-

A

-

71

D

E

E

-

-

-

-

-

-

-

-

-

103

G

-

R

-

-

-

-

-

-

-

-

-

107

M

-

-

-

I

-

I

-

-

-

-

-

108

S

-

P

-

P

P

P

P

P

P

P

P

116

K

-

L

-

I

I

I

I

I

I

T

I

117

S

-

Q

-

Q

Q

Q

Q

Q

Q

Q

Q

118

D

-

N

-

N

N

N

N

N

N

N

N

126

Y

-

F

-

F

F

F

F

F

F

F

F

127

D

-

-

-

N

-

-

-

-

-

N

-

133

P

-

-

-

-

T

-

T

T

T

-

T

163

V

-

T

-

-

-

-

T

T

T

-

I

257

A

-

-

-

-

-

-

-

-

-

T

-

289

G

-

R

-

-

-

-

-

-

-

-

-

318

L

I

-

-

-

-

-

-

-

-

-

-

323

T

P

P

P

P

P

P

P

P

P

P

P

324

I

-

L

-

L

L

L

L

I

I

L

I

330

V

-

A

-

A

A

A

A

A

A

A

A

359

T

-

-

-

-

-

-

-

P

P

-

P

360

P

-

-

-

K

K

K

K

K

K

K

K

372

P

-

-

-

-

-

-

-

-

-

-

S

374

P

-

-

-

-

-

-

-

S

S

-

S

382

E

-

-

-

-

-

-

-

K

K

-

K

400

Q

-

-

-

-

-

-

-

H

H

-

H

414

F

-

-

-

-

-

-

-

L

L

-

L

788

S

-

-

-

N

N

N

N

N

N

N

N

789

M

-

-

-

R

R

R

R

R

R

R

R

791

H

-

-

-

S

S

S

S

S

S

S

S

792

H

-

-

-

M

M

M

M

M

M

M

M

815

S

-

-

-

A

A

A

A

A

A

A

A

868

Q

-

-

-

-

-

-

-

T

T

-

T

869

A

-

-

-

V

V

V

-

V

V

V

V

873

G

-

-

-

D

D

D

D

D

D

D

D

919

S

-

-

-

N

N

N

N

N

N

N

N

930

D

-

-

-

-

-

-

-

-

-

E

-

938

K

-

-

-

R

R

R

R

R

R

R

R

941

T

-

-

-

S

S

S

S

S

S

S

S

1013

H

-

-

-

R

R

R

R

R

R

R

R

1038

N

S

-

-

T

T

T

T

T

T

T

T

1042

D

-

-

-

E

E

E

E

E

E

E

E

1089

R

-

-

-

H

H

H

H

H

H

H

H

  1. Origin: BJ Beijing, JS Jiangsu, TJ Tianjin, SC Sichuan, AZ Arizona, KS Kansas, NE Nebraska, IA Iowa, SD South Dakota
  2. Dashes represent amino acid conservation