TY - JOUR AU - Varsani, A. AU - Navas-Castillo, J. AU - Moriones, E. AU - Hernández-Zepeda, C. AU - Hernández-Zepeda, C. AU - Idris, A. PY - 2014 DA - 2014// TI - Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus JO - Arch Virol VL - 159 UR - https://doi.org/10.1007/s00705-014-2050-2 DO - 10.1007/s00705-014-2050-2 ID - Varsani2014 ER - TY - STD TI - King AM, Adams MJ, Carstens EB, Lefkowitz EJ (Eds.). Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses (Vol. 9). New York: Elsevier; 2012;352–355. ID - ref2 ER - TY - JOUR AU - Wright, E. A. AU - Heckel, T. AU - Groenendijk, J. AU - Davies, J. W. AU - Boulton, M. I. PY - 1997 DA - 1997// TI - Splicing features in maize streak virus virion- and complementary-sense gene expression JO - Plant J VL - 12 UR - https://doi.org/10.1046/j.1365-313x.1997.12061285.x DO - 10.1046/j.1365-313x.1997.12061285.x ID - Wright1997 ER - TY - JOUR AU - Pande, D. AU - Kraberger, S. AU - Lefeuvre, P. AU - Lett, J. M. AU - Shepherd, D. N. AU - Varsani, A. PY - 2012 DA - 2012// TI - A novel maize-infecting mastrevirus from La Reunion Island JO - Arch Virol VL - 157 UR - https://doi.org/10.1007/s00705-012-1314-y DO - 10.1007/s00705-012-1314-y ID - Pande2012 ER - TY - JOUR AU - Oluwafemi, S. AU - Kraberger, S. AU - Shepherd, D. N. AU - Martin, D. P. AU - Varsani, A. PY - 2014 DA - 2014// TI - A high degree of African streak virus diversity within Nigerian maize fields includes a new mastrevirus from Axonopus compressus JO - Arch Virol VL - 159 UR - https://doi.org/10.1007/s00705-014-2090-7 DO - 10.1007/s00705-014-2090-7 ID - Oluwafemi2014 ER - TY - JOUR AU - Wang, Y. J. AU - Zhang, D. S. AU - Zhang, Z. C. AU - Wang, S. AU - Qiao, Q. AU - Qin, Y. PY - 2015 DA - 2015// TI - First Report on Sweetpotato Symptomless Virus 1 (genus Mastrevirus family Geminiviridae) in sweetpotato in China JO - Plant Dis VL - 99 UR - https://doi.org/10.1094/PDIS-12-14-1358-PDN DO - 10.1094/PDIS-12-14-1358-PDN ID - Wang2015 ER - TY - JOUR AU - Xie, J. AU - Wang, X. AU - Liu, Y. AU - Zhou, G. PY - 2007 DA - 2007// TI - First report of the occurrence of Wheat dwarf virus in wheat in China JO - Plant Dis VL - 91 UR - https://doi.org/10.1094/PD-91-0111B DO - 10.1094/PD-91-0111B ID - Xie2007 ER - TY - JOUR AU - Kreuze, J. F. AU - Perez, A. AU - Untiveros, M. AU - Quispe, D. AU - Fuentes, S. AU - Barker, I. PY - 2009 DA - 2009// TI - Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses JO - Virology VL - 388 UR - https://doi.org/10.1016/j.virol.2009.03.024 DO - 10.1016/j.virol.2009.03.024 ID - Kreuze2009 ER - TY - JOUR AU - Wu, Q. AU - Luo, Y. AU - Lu, R. AU - Lau, N. AU - Lai, E. C. AU - Li, W. X. PY - 2010 DA - 2010// TI - Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs JO - Proc Natl Acad Sci VL - 107 UR - https://doi.org/10.1073/pnas.0911353107 DO - 10.1073/pnas.0911353107 ID - Wu2010 ER - TY - JOUR AU - Korf, I. PY - 2004 DA - 2004// TI - Gene finding in novel genomes JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-59 DO - 10.1186/1471-2105-5-59 ID - Korf2004 ER - TY - JOUR AU - Kumar, J. AU - Singh, S. P. AU - Kumar, J. AU - Tuli, R. PY - 2012 DA - 2012// TI - A novel mastrevirus infecting wheat in India JO - Arch Virol VL - 157 UR - https://doi.org/10.1007/s00705-012-1359-y DO - 10.1007/s00705-012-1359-y ID - Kumar2012 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1994 DA - 1994// TI - CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.22.4673 DO - 10.1093/nar/22.22.4673 ID - Thompson1994 ER - TY - JOUR AU - Tamura, K. AU - Stecher, G. AU - Peterson, D. AU - Filipski, A. AU - Kumar, S. PY - 2013 DA - 2013// TI - MEGA6: molecular evolutionary genetics analysis version 6.0 JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mst197 DO - 10.1093/molbev/mst197 ID - Tamura2013 ER - TY - JOUR AU - Yang, X. AU - Wang, Y. AU - Guo, W. AU - Xie, Y. AU - Xie, Q. AU - Fan, L. PY - 2011 DA - 2011// TI - Characterization of small interfering RNAs derived from the geminivirus/betasatellite complex using deep sequencing JO - PLoS One VL - 6 UR - https://doi.org/10.1371/journal.pone.0016928 DO - 10.1371/journal.pone.0016928 ID - Yang2011 ER - TY - JOUR AU - Aregger, M. AU - Borah, B. K. AU - Seguin, J. AU - Rajeswaran, R. AU - Gubaeva, E. G. AU - Zvereva, A. S. PY - 2012 DA - 2012// TI - Primary and secondary siRNAs in geminivirus-induced gene silencing JO - PLoS Pathog VL - 8 UR - https://doi.org/10.1371/journal.ppat.1002941 DO - 10.1371/journal.ppat.1002941 ID - Aregger2012 ER - TY - JOUR AU - Mi, S. AU - Cai, T. AU - Hu, Y. AU - Chen, Y. AU - Hodges, E. AU - Ni, F. PY - 2008 DA - 2008// TI - Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5’ terminal nucleotide JO - Cell VL - 133 UR - https://doi.org/10.1016/j.cell.2008.02.034 DO - 10.1016/j.cell.2008.02.034 ID - Mi2008 ER - TY - JOUR AU - Takeda, A. AU - Iwasaki, S. AU - Watanabe, T. AU - Utsumi, M. AU - Watanabe, Y. PY - 2008 DA - 2008// TI - The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins JO - Plant Cell Physiol VL - 49 UR - https://doi.org/10.1093/pcp/pcn043 DO - 10.1093/pcp/pcn043 ID - Takeda2008 ER - TY - JOUR AU - Miozzi, L. AU - Pantaleo, V. AU - Burgyán, J. AU - Accotto, G. P. AU - Noris, E. PY - 2013 DA - 2013// TI - Analysis of small RNAs derived from tomato yellow leaf curl Sardinia virus reveals a cross reaction between the major viral hotspot and the plant host genome JO - Virus Res VL - 178 UR - https://doi.org/10.1016/j.virusres.2013.09.029 DO - 10.1016/j.virusres.2013.09.029 ID - Miozzi2013 ER - TY - JOUR AU - Xu, Y. AU - Huang, L. AU - Fu, S. AU - Wu, J. AU - Zhou, X. PY - 2012 DA - 2012// TI - Population diversity of rice stripe virus-derived siRNAs in three different hosts and RNAi-based antiviral immunity in Laodelphgax striatellus JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0046238 DO - 10.1371/journal.pone.0046238 ID - Xu2012 ER - TY - JOUR AU - Csorba, T. AU - Pantaleo, V. AU - Burgyán, J. PY - 2009 DA - 2009// TI - RNA silencing: an antiviral mechanism JO - Adv Virus Res VL - 75 UR - https://doi.org/10.1016/S0065-3527(09)07502-2 DO - 10.1016/S0065-3527(09)07502-2 ID - Csorba2009 ER - TY - JOUR AU - Wang, X. B. AU - Wu, Q. AU - Ito, T. AU - Cillo, F. AU - Li, W. X. AU - Chen, X. PY - 2010 DA - 2010// TI - RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana JO - Proc Natl Acad Sci VL - 107 UR - https://doi.org/10.1073/pnas.0904086107 DO - 10.1073/pnas.0904086107 ID - Wang2010 ER - TY - JOUR AU - Donaire, L. AU - Wang, Y. AU - Gonzalez-Ibeas, D. AU - Mayer, K. F. AU - Aranda, M. A. AU - Llave, C. PY - 2009 DA - 2009// TI - Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes JO - Virology VL - 392 UR - https://doi.org/10.1016/j.virol.2009.07.005 DO - 10.1016/j.virol.2009.07.005 ID - Donaire2009 ER - TY - JOUR AU - Donaire, L. AU - Barajas, D. AU - Martínez-García, B. AU - Martínez-Priego, L. AU - Pagán, I. AU - Llave, C. PY - 2008 DA - 2008// TI - Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs JO - J Virol VL - 82 UR - https://doi.org/10.1128/JVI.00272-08 DO - 10.1128/JVI.00272-08 ID - Donaire2008 ER - TY - JOUR AU - Molnár, A. AU - Csorba, T. AU - Lakatos, L. AU - Várallyay, É. AU - Lacomme, C. AU - Burgyán, J. PY - 2005 DA - 2005// TI - Plant virus-derived small interfering RNAs originate predominantly from highly structured single-stranded viral RNAs JO - J Virol VL - 79 UR - https://doi.org/10.1128/JVI.79.12.7812-7818.2005 DO - 10.1128/JVI.79.12.7812-7818.2005 ID - Molnár2005 ER - TY - JOUR AU - Ho, T. AU - Wang, H. AU - Pallett, D. AU - Dalmay, T. PY - 2007 DA - 2007// TI - Evidence for targeting common siRNA hotspots and GC preference by plant Dicer-like proteins JO - FEBS Lett VL - 581 UR - https://doi.org/10.1016/j.febslet.2007.06.022 DO - 10.1016/j.febslet.2007.06.022 ID - Ho2007 ER - TY - JOUR AU - Du, Q. S. AU - Duan, C. G. AU - Zhang, Z. H. AU - Fang, Y. Y. AU - Fang, R. X. AU - Xie, Q. PY - 2007 DA - 2007// TI - DCL4 targets Cucumber mosaic virus satellite RNA at novel secondary structures JO - J Virol VL - 81 UR - https://doi.org/10.1128/JVI.02885-06 DO - 10.1128/JVI.02885-06 ID - Du2007 ER - TY - JOUR AU - Gruber, A. R. AU - Lorenz, R. AU - Bernhart, S. H. AU - Neuböck, R. AU - Hofacker, I. L. PY - 2008 DA - 2008// TI - The vienna RNA websuite JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn188 DO - 10.1093/nar/gkn188 ID - Gruber2008 ER - TY - JOUR AU - Muhire, B. AU - Martin, D. P. AU - Brown, J. K. AU - Navas-Castillo, J. AU - Moriones, E. AU - Zerbini, F. M. PY - 2013 DA - 2013// TI - A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae) JO - Arch Virol VL - 158 UR - https://doi.org/10.1007/s00705-012-1601-7 DO - 10.1007/s00705-012-1601-7 ID - Muhire2013 ER - TY - JOUR AU - Zerbino, D. R. AU - Birney, E. PY - 2008 DA - 2008// TI - Velvet: algorithms for de novo short read assembly using de Bruijn graphs JO - Genome Res VL - 18 UR - https://doi.org/10.1101/gr.074492.107 DO - 10.1101/gr.074492.107 ID - Zerbino2008 ER - TY - JOUR AU - Murray, M. G. AU - Thompson, W. F. PY - 1980 DA - 1980// TI - Rapid isolation of high molecular weight plant DNA JO - Nucleic Acids Res VL - 8 UR - https://doi.org/10.1093/nar/8.19.4321 DO - 10.1093/nar/8.19.4321 ID - Murray1980 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Seguin, J. AU - Otten, P. AU - Baerlocher, L. AU - Farinelli, L. AU - Pooggin, M. M. PY - 2014 DA - 2014// TI - MISIS: A bioinformatics tool to view and analyze maps of small RNAs derived from viruses and genomic loci generating multiple small RNAs JO - J Virol Methods VL - 195 UR - https://doi.org/10.1016/j.jviromet.2013.10.013 DO - 10.1016/j.jviromet.2013.10.013 ID - Seguin2014 ER - TY - JOUR AU - Simmonds, P. AU - Karakasiliotis, I. AU - Bailey, D. AU - Chaudhry, Y. AU - Evans, D. J. AU - Goodfellow, I. G. PY - 2008 DA - 2008// TI - Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn096 DO - 10.1093/nar/gkn096 ID - Simmonds2008 ER -