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Table 1 Characterization of NDV strains used in this study

From: Characterization of emerging Newcastle disease virus isolates in China

NDV strain COU HO Year PT Cleavage site112–117 GT ICPI F No. HN No.
Clone 30 USA CK 1999 V GRQGRL II NA Y18898 Y18898
B1 USA CK 2000 L GRQGRL II 0.13 AF309418 AF309418
LaSota USA CK 1950 L GRQGRL II 0.31 JF950510 JF950510
Mukteswar CH CK 2010 L RRQRRF III NA JF950509 JF950509
Herts/33 NL CK 2004 V RRQRRF IV 1.99 AY741404 AY741404
NL/152608/93 NL CK 1993 V RRQKRF VIIa NA JN986837 JN986837
chicken/Kudus/018/10 INA CK 2010 V RRQKRF VIIa NA HQ697260 HQ697260
chicken/Sweden/97 SE CK 1997 V RRQRRF VIIb NA GU585905 GU585905
Sterna/Astr/2755/2001 RUS CK 2001 V RRQRRF VIIb NA AY865652 AY865652
TW-99-175 TW CK 1999 V RRQKRF VIIc 1.73 EU604057 EU579448
XJ-2/97 CH CK 1997 V RRQKRF VIId 1.94 AF458011 AF458011
JS/1/97/Go CH GO 1997 V RRQRRF VIId 1.84 AF456435 AF456429
BP01 CH PE 1999 V RRQKRF VIId NA JN599167 JN599167
JS/5/06/Go CH GO 2006 V RRQKRF VIId NA EF211811 EF211811
HA-14-07-Ch CH CK 2007 V RRQKRF VIId NA GQ245787 GQ245787
JSD0812 CH DK 2008 V RRQKRF VIId NA GQ849007 GQ849007
sh09 CH CK 2009 V RRQKRF VIId NA GU124591 GU124592
chicken/China/JSX1/2010 CH CK 2010 V RRQKRF VIId NA JX519467 JX519467
JS-12-11-Ch CH CK 2011 V RRQKRF VIId NA JQ013866 JQ013842
Ch/SD672/12 CH CK 2012 V RRQKRF VIId NA KC020114 JX914489
NDV/Chicken/TC/1/2011 CH CK 2011 V RRQKRF VIId 1.78 KC020314 KC020305
NDV/Chicken/TC/2/2011 CH CK 2011 V RRQKRF VIId 1.76 KC020315 KC020306
NDV/Chicken/TC/3/2011 CH CK 2011 V RRQKRF VIId 1.73 KC020316 KC020307
NDV/Chicken/TC/4/2011 CH CK 2011 V RRQKRF VIId 1.75 KC020317 KC020308
NDV/Chicken/TC/5/2011 CH CK 2011 V RRQKRF VIId 1.67 KC020318 KC020309
NDV/Chicken/TC/6/2011 CH CK 2011 V RRQKRF VIId 1.68 KC020319 KC020310
NDV/Chicken/TC/7/2011 CH CK 2011 V RRQKRF VIId 1.67 KC020320 KC020311
NDV/Chicken/TC/8/2011 CH CK 2011 V RRQKRF VIId 1.70 KC020321 KC020312
NDV/Chicken/TC/9/2011 CH CK 2011 V RRQKRF VIId 1.69 KC020322 KC020313
PX2/03 CH DK 2003 V RRQKRF VIId NA EF175145 EF175145
Hebei/01/2012 CH CK 2012 V RRQKRF VIId 1.73 KC542914 KC542914
Shandong/02/2012 CH CK 2012 V RRQKRF VIId NA KC542913 KC542913
YZCQ/Liaoning/08 CH CK 2008 V RRQKRF VIId NA FJ608351 FJ608369
Beijing/01/2012 CH CK 2012 V RRQKRF VIId 1.91 KC542911 KC542911
SD-02-11-Ch CH CK 2011 V RRQKRF VIId NA JQ013878 JQ013849
Ch/SD754/12 CH CK 2012 V RRQKRF VIId NA JX840452 JX840450
Ch/SD755/12 CH CK 2012 V RRQKRF VIId NA JX840453 JX840451
Ch/SD758/12 CH CK 2012 V RRQKRF VIId NA JX840455 JX683723
Ch/SD01/13 CH CK 2013 V RRQKRF VIId NA KF055273 KF055274
TW/99-156B TW CK 1999 V RRQKRF VIIe 1.79 AF234031 AF400504
TW-02-301 TW CK 2002 V RRQKRF VIIe 1.75 DQ898538 EU526302
TW-02-302 TW CK 2002 V RRQKRF VIIe 1.75 DQ898537 EU526303
TW-04-CB8 TW CK 2004 V RRQKRF VIIe 1.75 DQ898528 AB531987
TW/08-02 TW CK 2008 V RRQKRF VIIe NA AB512614 AB531988
  1. NL/152608/93: APMV-1/chicken/NL/152608/93; Hebei/01/2012: chicken/China/ Hebei/01/2012; Shandong/02/2012: chicken/China/ Shandong/02/2012; Beijing/01/2012: chicken/China/ Beijing/01/2012. CH: China; NL: Netherlands; INA: Indonesia; SE: Sweden; RUS: Russia; TW: Taiwan; GO: Goose; CK: Chicken; DK: Duck; PE: Penguin; COU: Country; HO: Host; PT: Pathotype; GT: Genotype; F no.: F gene accession no.; HN no.: HN gene accession no.; NA: not available
  2. Clone 30, LaSota, Mukteswar and B1 strains are attenuated vaccine strains that widely used in the China and world; the Herts/33 are inactivated vaccine strains that used Taiwan