From: Phylogenetic and recombination analysis of Tobacco bushy top virus in China
Event number | Recombinant Sequence(s) | Breakpoint position | Parental sequence (s) | Recombinant score | P-Value for the six detection methods in RDP4 | |||||
---|---|---|---|---|---|---|---|---|---|---|
Begin/End | Minor/Major | RDP | GENECONV | BootScan | MaxChi | Chimaera | SiScan | |||
1 | TBTV-JC | 616/965 | YYXi/MD-II | 0.472 | NS | NS | NS | 8.76E-03 | 1.68E-02 | 4.07E-03 |
2 | TBTV-MD-I | 241/1464 | JC/YYXi | 0.469 | 2.71E-02 | 1.06E-02 | 1.11E-02 | 1.93E-05 | 4.78E-04 | 1.19E-09 |
3 | TBTV-MD-I | 616/965 | YYXi/MD-II | 0.472 | NS | NS | NS | 8.76E-03 | 1.68E-02 | 4.07E-03 |
4 | TBTV-MD-I | 629/3207 | JC/YYXi | 0.608 | 3.07E-02 | NS | 2.97E-02 | 1.65E-03 | 6.97E-03 | 5.17E-08 |
5 | TBTV-MD-II | 279/519 | JC/Unknown (YYXi) | 0.482 | 1.81E-03 | NS | 1.95E-02 | 3.48E-05 | 7.87E-06 | 3.56E-05 |
6 | TBTV-MD-II | 2716/3511 | YWDu/Unknown (YYXi) | 0.426 | 7.26E-04 | NS | 1.11E-02 | 1.22E-06 | 3.49E-06 | NS |
7 | TBTV-Ch | 210/618 | MD-I/YYXi | 0.426 | NS | 3.18E-02 | 2.76E-02 | 7.31E-03 | 3.32E-02 | 4.49E-06 |
8 | TBTV-Ch | 211/652 | JC/YYXi | 0.482 | 1.81E-03 | NS | 1.95E-02 | 3.48E-05 | 7.87E-06 | 3.56E-05 |
9 | TBTV-Ch | 253/385 | MD-II/YLLi | 0.419 | NS | NS | NS | 3.24E-02 | NS | NS |
10 | TBTV-Ch | 652/3207 | YYXi/JC | 0.608 | 3.07E-02 | NS | 2.97E-02 | 1.65E-03 | 6.97E-03 | 5.17E-08 |
11 | TBTV-Ch | 3574/142 | YYXi/MD-I | 0.461 | 1.23E-02 | NS | 1.37E-02 | 1.37E-02 | 1.62E-04 | NS |
12 | TBTV-YWSh | 211/793 | JC/YYXi | 0.483 | 1.04E-02 | NS | 1.00E-02 | 4.09E-02 | 1.23E-02 | 1.09E-06 |
13 | TBTV-YWSh | 253/385 | MD-II/YLLi | 0.419 | NS | NS | NS | 3.24E-02 | NS | NS |
14 | TBTV-YWSh | 384/666 | MD-I/YYXi | 0.426 | NS | 3.18E-02 | 2.76E-02 | 7.31E-03 | 3.32E-02 | 4.49E-06 |
15 | TBTV-YWSh | 652/3207 | YYXi/JC | 0.608 | 3.07E-02 | NS | 2.97E-02 | 1.65E-03 | 6.97E-03 | 5.17E-08 |
16 | TBTV-YYXi | 183/2070 | MD-II/JC | 0.593 | 2.95E-03 | 3.16E-02 | 8.25E-05 | NS | NS | 6.63E-05 |
17 | TBTV-YYXi | 1355/1687 | YWSh/Unknown (MD-II) | 0.420 | NS | 1.41E-02 | NS | 4.78E-02 | NS | 6.90E-06 |
18 | TBTV-YYXi | 2571/3508 | Unknown (MD-II)/Ch | 0.443 | NS | NS | NS | 1.53E-04 | NS | NS |
19 | TBTV-YYXi | 3155/3603 | Unknown (MD-II)/ YLLi | 0.615 | 1.03E-02 | 4.02E-04 | 2.49E-04 | 9.70E-04 | 7.29E-04 | 4.44E-05 |
20 | TBTV-YYXi | 3207/3514 | Unknown(JC)/YWDu | 0.841 | 3.26E-04 | 2.37E-02 | NS | 6.50E-04 | 1.63E-02 | NS |
21 | TBTV-YYXi | 3538/209 | Ch/Unknown(MD-I) | 0.534 | NS | NS | NS | 7.38E-06 | 4.47E-04 | NS |
22 | TBTV-YLLi | 211/1515 | JC/YYXi | 0.608 | 3.07E-02 | NS | 2.97E-02 | 1.65E-03 | 6.97E-03 | 5.17E-08 |
23 | TBTV-YLLi | 616/965 | YYXi/MD-II | 0.472 | NS | NS | NS | 8.76E-03 | 1.68E-02 | 4.07E-03 |
24 | TBTV-YLLi | 1533/1986 | MD-II/MD-I | 0.741 | 1.21E-08 | 3.18E-04 | 9.88E-09 | 8.14E-04 | 5.48E-04 | NS |
25 | TBTV-YLLi | 1533/2480 | YYXi/MD-I | 0.731 | 1.31E-03 | NS | 2.93E-02 | 3.86E-08 | 3.61E-05 | NS |
26 | TBTV-YLLi | 1554/1971 | Ch/MD-I | 0.611 | NS | NS | 3.56E-04 | 1.26E-03 | NS | NS |
27 | TBTV-YWDu | 2027/11 | Ch/Unknown(MD-II) | 0.632 | 3.34E-42 | 6.13E-42 | 1.08E-39 | 5.51E-19 | 7.16E-19 | 2.38E-23 |
28 | TBTV-YWDu | 2042/3170 | Ch/Unknown(MD-II) | 0.601 | 5.12E-23 | 1.81E-23 | 7.17E-25 | 3.99E-09 | 3.28E-11 | 1.92E-09 |
29 | TBTV-YWDu | 3171/4140 | Ch/Unknown(MD-II) | 0.545 | 3.34E-42 | 6.13E-42 | 1.08E-39 | 5.42E-06 | 5.80E-06 | 1.13E-14 |