Table 2 Nucleotide sequence and amino acid identities (%) for TBTV-JC, TBTV-MD-I, TBTV-MD-II and previously reported TBTV isolates based on ORF1 (p35), p98-C, ORF3 (p26) and ORF4 (p27)
From: Phylogenetic and recombination analysis of Tobacco bushy top virus in China
TBTV-JC | TBTV-MD-I | TBTV-MD-II | TBTV-Ch | TBTV-YWSh | TBTV-YYXi | TBTV-YLLi | TBTV-YWDu | |
|---|---|---|---|---|---|---|---|---|
TBTV-JC | 96.0 | 90.9 | 94.9 | 95.9 | 92.4 | 96.4 | 75.0 | |
(96.5) | (94.3) | (94.6) | (95.9) | (93.0) | (97.1) | (73.7) | ||
TBTV-MD-I | 97.3 | 90.5 | 94.3 | 95.9 | 92.5 | 99.2 | 75.7 | |
(98.9) | (92.7) | (92.7) | (94.0) | (92.4) | (98.7) | (73.7) | ||
TBTV-MD-II | 95.6 | 95.6 | 92.3 | 92.8 | 90.6 | 90.5 | 76.1 | |
(98.2) | (97.6) | (94.9) | (95.9) | (91.4) | (93.3) | (74.9) | ||
TBTV-Ch | 97.3 | 97.7 | 96.6 | 98.4 | 93.3 | 94.8 | 76.0 | |
(99.5) | (98.7) | (98.7) | (98.1) | (92.4) | (93.3) | (74.3) | ||
TBTV-YWSh | 97.5 | 98.0 | 96.9 | 99.5 | 94.4 | 96.4 | 76.7 | |
(99.3) | (98.9) | (98.7) | (99.8) | (94.0) | (94.6) | (74.3) | ||
TBTV-YYXi | 96.4 | 96.6 | 95.9 | 97.9 | 98.2 | 93.0 | 76.4 | |
(99.1) | (98.4) | (98.4) | (99.6) | (99.5) | (93.0) | (74.3) | ||
TBTV-YLLi | 96.9 | 98.4 | 96.8 | 98.0 | 98.3 | 97.4 | 75.9 | |
(98.9) | (99.3) | (98.0) | (99.1) | (99.3) | (98.7) | (74.0) | ||
TBTV-YWDu | 90.5 | 90.4 | 89.7 | 91.1 | 91.2 | 90.7 | 90.8 | |
(96.4) | (95.8) | (95.8) | (96.5) | (96.5) | (96.4) | (95.8) | ||
TBTV-JC | 98.6 | 97.3 | 97.2 | 98.3 | 95.8 | 98.5 | 96.9 | |
(96.2) | (93.7) | (92.4) | (95.8) | (89.9) | (96.2) | (92.0) | ||
TBTV-MD-I | 98.6 | 98.5 | 98.5 | 99.4 | 97.1 | 99.9 | 98.2 | |
(99.6) | (96.6) | (95.8) | (98.7) | (93.3) | (100) | (95.4) | ||
TBTV-MD-II | 97.4 | 98.5 | 97.8 | 98.7 | 96.9 | 98.6 | 97.5 | |
(98.8) | (99.2) | (94.1) | 97.1) | (93.3) | (96.6) | (93.7) | ||
TBTV-Ch | 97.3 | 98.5 | 97.8 | 98.9 | 96.4 | 98.6 | 99.7 | |
(98.8) | (99.2) | (99.1) | (96.6) | (91.1) | (95.8) | (99.6) | ||
TBTV-YWSh | 98.4 | 99.5 | 98.8 | 98.9 | 96.9 | 99.6 | 98.6 | |
(99.2) | (99.6) | (99.6) | (99.6) | (93.3) | (98.7) | (96.2) | ||
TBTV-YYXi | 95.5 | 96.6 | 96.5 | 95.9 | 96.5 | 96.9 | 96.1 | |
(96.7) | (97.1) | (96.3) | (96.3) | (96.7) | (93.3) | (90.7) | ||
TBTV-YLLi | 98.5 | 99.9 | 98.6 | 98.6 | 99.6 | 96.5 | 98.3 | |
(99.2) | (99.6) | (99.6) | (99.6) | (100) | (96.7) | (95.4) | ||
TBTV-YWDu | 97.0 | 98.2 | 97.6 | 99.7 | 98.6 | 95.7 | 98.7 | |
(98.0) | (98.4) | (98.4) | (99.2) | (98.8) | (95.5) | (98.8) |