Table 3 Characterization of SNPs in three OsHV-1 variants
Regions | All three variants | OsHV-1-SB vs OsHV-1 | OsHV-1-SB vs AVNV | AVNV vs OsHV-1 | ||||
|---|---|---|---|---|---|---|---|---|
No. of SNP | Frequency (bp/Kb) | No. of SNP | Frequency (bp/Kb) | No. of SNP | Frequency (bp/Kb) | No. of SNP | Frequency (bp/Kb) | |
SNPs in genomes | 1037 | 5.4 | 698 | 3.6 | 859 | 4.5 | 513 | 2.6 |
SNPs in ORFs | 727 | 4.4 | 498 | 3 | 635 | 3.8 | 374 | 2.2 |
SNPs in non-coding regions | 310 | 11.9 | 200 | 7.6 | 224 | 8.6 | 148 | 5.7 |
SNPs in fragmented ORFs | 69 | 5.3 | 42 | 3.3 | 60 | 4.7 | 35 | 2.7 |
SNPs in ORFs (not counting fragmented ORFs) | 658 | 4.3 | 456 | 3 | 575 | 3.7 | 339 | 2.2 |