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Table 1 Large insertions/deletions and associated variations of ORFs in OsHV-1-SB compared to OsHV-1and AVNV

From: Complete genome sequence of Ostreid herpesvirus-1 associated with mortalities of Scapharca broughtonii broodstocks

Variation types

Position

Size

Affected regions

Affected ORFs

Status in OsHV-1 and AVNVa

Insertion

1654-1741

87

TRL

None

AVNV

 

60819-63478

2659

UL

125, 126, 127

AVNV

 

178067-178155

88

IRL

None

AVNV

 

180167-180231

64

IRS

None

OsHV-1

 

184924-185970

1046

IRS

None

AVNV

 

189425-190310

885

US

None

None

 

193194-194240

1046

TRS

None

AVNV

 

198929-198993

64

TRS

None

OsHV-1

 

175367-176273

906

UL

114

None

 

187270-187366

96

US

None

None

Deletion

70706-70707

599

UL

48

None

 

75526-75527

1849

UL

50

None

 

116350-116351

450

UL

None

AVNV

 

179809-179810

1506

IRS

115

None

 

182505-182506

1188

IRS

117

AVNV

 

186872-186873

115

IRS

None

AVNV

 

187088-187089

235

IRS

None

None

 

192054-192055

235

TRS

None

None

 

192155-192156

155

TRS

None

AVNV

 

196659-196660

1188

TRS

117

None

 

175367-176273

4113

UL

4, 5, 114

None

 

187270-187366

3368

US

122, 123

None

  1. aindicated whether the given variation was present in OsHV-1, AVNV or none of them