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Table 3 Polymorphic sites between envelope and NS5 sequences belonging to southeastern coastal Texas genotype and our samples from Northern of Colombia (Córdoba, San Bernardo del Viento)

From: Evolutionary relationships of West Nile virus detected in mosquitoes from a migratory bird zone of Colombian Caribbean

Sequences

Polymorphic sites

Envelope

NS5

1

11222222

22455695

57012222

834745480

91811266

440675140

93524727

AF202541.1 HNY1999

TGCTTGAGC

TCCTTCCG

JN716371.1 COL524

CAT....T.

…C..T.

JN716372.1 COL9835

CAT......

…C..T.

AY712948.1 Mosquito-v4369

CATC.A..T

CTT..TT.

GU828004.1 Bird1519

CATC.A..T

CTT..TTA

GU828002.1 v4095

CATC.A..T

C.T.CTT.

CDCCA4-12 Cx.erraticus

CATCC.G.T

C.T..TT.

CDCCZ2-21 Cx.erraticus

CATCC.G.T

C.T..TT.

  1. Number represented polymorphic positions inside alignment of envelope and NS5 sequences and dots indicate sequence homology. Nucleotides in shadow evidenced unique substitutions that distinguish WNV-detected in mosquito pools from other strains