|
Sequences
|
Polymorphic sites
|
|---|
|
Envelope
|
NS5
|
|---|
|
1
|
11222222
|
|---|
|
22455695
|
57012222
|
|---|
|
834745480
|
91811266
|
|---|
|
440675140
|
93524727
|
|---|
|
AF202541.1 HNY1999
|
TGCTTGAGC
|
TCCTTCCG
|
|
JN716371.1 COL524
|
CAT....T.
|
…C..T.
|
|
JN716372.1 COL9835
|
CAT......
|
…C..T.
|
|
AY712948.1 Mosquito-v4369
|
CATC.A..T
|
CTT..TT.
|
|
GU828004.1 Bird1519
|
CATC.A..T
|
CTT..TTA
|
|
GU828002.1 v4095
|
CATC.A..T
|
C.T.CTT.
|
|
CDCCA4-12 Cx.erraticus
|
CATCC.G.T
|
C.T..TT.
|
|
CDCCZ2-21 Cx.erraticus
|
CATCC.G.T
|
C.T..TT.
|
- Number represented polymorphic positions inside alignment of envelope and NS5 sequences and dots indicate sequence homology. Nucleotides in shadow evidenced unique substitutions that distinguish WNV-detected in mosquito pools from other strains
