Table 1 Motifs of the Rep from the novel gemycircularviruses and reference gemycircularviruses
From: Fecal virome analysis of three carnivores reveals a novel nodavirus and multiple gemycircularviruses
Virus name | Size (nt) | Nonanucleotide motif | Motif I | Motif II | GRS | Motif III | Walker-A | Walker-B |
|---|---|---|---|---|---|---|---|---|
Mongoose feces-associated gemycircularvirus a | 2089 | TATAAATAC | LLTYA | HLHSFID | DIFDVDGCHPNVSPTH | YACKD | GPSRMGKT | VFDDI |
Mongoose feces-associated gemycircularvirus b | 2189 | TATAAATAC | LFTYS | HYHVFDV | RKFDVEGFHPNIVPSL | YATKD | GRSKTGKT | VFDDI |
Mongoose feces-associated gemycircularvirus c | 2124 | TAATATTAC | LFTYS | HLHAFVD | RKFDVEGFHPNIISTS | YATKD | GPSRTGKT | VFDDI |
Mongoose feces-associated gemycircularvirus d | 2251 | TAATATTAT | LLTYA | HLHCFVD | RVFDVGGFHPNISPSR | YAIKD | GRSLTGKT | VLDDV |
Badger feces-associated gemycircularvirus | 2113 | TAATACTAT | LLTYA | HLHAFVH | TVFDVAGFHPNISPSF | YAIKD | GPSRVGKT | VFDDI |
MSSI2.225 virus | 2259 | TAATGTTAT | LLTYP | HLHAFVD | RAFDVEGCHPNVSPSP | YAIKD | GGKLSCTS | IFDDF |
Fecal associated gemycircularvirus 1a | 2197 | TAATATTAT | LLTYA | HLHAFVD | DVFDVGGRHPNLVPSY | YAIKD | GDTRLGKT | VFDDM |
Faecal associated gemycircularvirus 4 | 2224 | TAATGTTAT | LLTYA | HLHAFCD | DVFDVGGFHPNIEASR | YAIKD | GDTRLGKT | VFDDM |
Fecal associated gemycircularvirus 5 | 2187 | TAATATTAT | LVTYP | HLHVFCD | DIFDVGGFHPNIERSK | YACKD | GDALTGKT | VIDDI |
Cassava-associated circular DNA virus | 2220 | TAATATTAT | LITYA | HLHCFID | DIFDVDGRHPNIEPSW | YAIKD | GDSRSGKT | IFDDI |
Dragonfly-associated circular DNA virus-2 | 2236 | TAATATTAT | LVTYP | HLHCFAD | DIFDVDGCHPNIQPST | YAIKD | GESRTGKT | IFDDI |
Mosquito VEM virus SDBVL G | 2238 | TAATATTAT | LLTYA | HFHAFLD | RFWDIAGRHPNIARVG | YAIKD | GPSRTGK? | VFDDI |