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Table 1 HPAI H5 proposed clade 2.3.4.4 strains containing different N types

From: Detection of highly pathogenic zoonotic influenza virus H5N6 by reverse-transcriptase quantitative polymerase chain reaction

Influenza A virus

Subtype

Accession

A/wild duck/Shandong/628/2011

H5N1

JX534565

A/chicken/China/AH/2012

H5N1

KC631941

A/muscovy duck/Vietnam/LBM631/2014

H5N1

AB979455

A/muscovy duck/Vietnam/LBM635/2014

H5N1

AB979487

A/muscovy duck/Vietnam/LBM636/2014

H5N1

AB979495

A/duck/Vietnam/LBM638/2014

H5N1

AB979503

A/duck/Eastern China/1111/2011

H5N2

JQ041401

A/goose/Eastern China/1112/2011

H5N2

JQ041402

A/duck/Jiangsu/m234/2012

H5N2

JX507355

A/duck/Guangdong/wy11/2008

H5N5

CY091627

A/duck/Guangdong/wy19/2008

H5N5

CY091635

A/environment/Zhenjiang/C13/2013

H5N6

KJ938658

A/duck/Guangdong/GD01/2014

H5N6

KJ754145

A/duck/Lao/XBY004/2014

H5N6

KM496977

A/duck/Jiangsu/k1203/2010

H5N8

JQ973694

A/duck/Zhejiang/W24/2013

H5N8

KJ476669

A/duck/Zhejiang/6D18/2013

H5N8

KJ476670

A/breeder duck/Korea/Gochang1/2014

H5N8

KJ413834

A/broiler duck/Korea/Buan2/2014

H5N8

KJ413842

A/baikal teal/Korea/Donglim3/2014

H5N8

KJ413850

A/chicken/Kumamoto/1-7/2014

H5N8

AB932556

  1. The influenza A virus, segment 4 hemagglutinin (HA) gene sequences were identified by BLASTn analysis of HA sequence from A/duck/Laos/XBY004/2014(H5N6) (GenBank accession performed on 2nd September, 2014). The listed strains share 100% identity to the target region of probes D-720 PRB and D-724 PRB (MGB) of the proposed H5 clade 2.3.4.4 specific qRT-PCR assays. The H5 strains are sorted by N subtype N1, N2, N5, N6, and N8.