Table 3 Intra-subtype C recombinants detected using SQUEAL

0040_pol

0.749277

0.750944

0.750935

112 (111–113); 770 (769–771)

0042A_pol

0.917024

0.945140

0.945136

818 (797–839)

0143A_pol

0.691903

0.957455

0.957454

706 (701–711); 846 (844–848)

0173A_pol

0.736986

0.748732

0.748732

316 (250–382)

0040_IN

0.673024

0.690546

0.690544

551 (499–603)

0098A_IN

0.794292

0.999993

0.999127

172 (171–173); 383 (382–384); 736 (730–742)