Table 1 Primers used in the amplification of the partial HIV-1 gene products
Primers # | Primer sequence 5’ to 3’ | HXB2 position* |
|---|---|---|
p24-1 (gag) | AGYCAAAATTAYCCYATAGT | 1174 - 1193 |
p24-2 (gag) | AGRACYTTRAAYGCATGGGT | 1237 - 1256 |
p24-6 (gag) | TGTGWAGCTTGYTCRGCTC | 1673 - 1654 |
p24-7 (gag) | CCCTGRCATGCTGTCATCA | 1844 - 1826 |
PR-5′ prot-1 (pol) | TAATTTTTTAGGGAAGATCTGGCCTTCC | 2082 - 2109 |
PR-5′ prot-2 (pol) | TCAGAGCAGACCAGAGCCAACAGCCCCA | 2136 - 2163 |
RT-NE135 (pol) | CCTACTAACTTCTGTATGTCATTGACAGTCCAGCT | 3334 - 3300 |
RT-MJ4 (pol) | CTGTTAGTGCTTTGGTTCCTCT | 3420 - 3399 |
Poli 5 (integrase) | CACACAAAGGRATTGGAGGAAATG | 4162 - 4185 |
poli7 (integrase) | AACAAGTAGATAAATTAGTCAGT | 4186 - 4208 |
poli6 (integrase) | ATACATATGRTGTTTTACTAARCT | 5130 - 5107 |
poli8 (integrase) | TAGTGGGATGTGTACTTCTGAAC | 5217 - 5195 |
JH41 (env) | CAGCAGGWAGCACKATGGG | 7798 - 7816 |
Env 27 F (env) | CTGGYATAGTGCARCARCA | 7861 - 7879 |
Menv19 R (env) | AARCCTCCTACTATCATTATRA | 8299 - 8278 |
JH38 (env) | GGTGARTATCCCTKCCTAAC | 8346 - 8365 |