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Table 3 Sequence alignment of the highly polymorphic region (HPR) of the hemagglutinin-esterase (HE) from HPR7 isolates

From: Genetic analysis and comparative virulence of infectious salmon anemia virus (ISAV) types HPR7a and HPR7b from recent field outbreaks in Chile

Group

ISAV isolate (GenBank Acc. No.)

Predicted amino acid sequence

aa deleted

Reference

HPR7a

Norway H17/96 (AF364891)

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

L

S

N

T

F

I

S

M

G

V

A

23

Devold et al. 2001 [24]

HPR7a

Chile 220 (KJ944288)

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

L

S

N

T

F

I

S

M

G

V

A

23

This study

HPR7b

Chile 31991-3 N (FJ786983)

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

L

S

N

I

F

I

S

M

G

V

A

23

Kibenge et al. 2009 [3]

HPR7b

Chile 272 (KJ944290)

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

L

S

N

I

F

I

S

M

G

V

A

23

This study

HPR7b

Chile 302 (KJ944294)

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

L

S

N

I

F

I

S

M

G

V

A

23

This study

HPR7b

Chile 304 (KJ944296)

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

L

S

N

I

F

I

S

M

G

V

A

23

This study

HPR7c

Norway R171/07

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

L

S

N

I

S

I

S

M

G

V

A

23

Plarre 2011 [25]

HPR7d

-

T

D

V

-

-

R

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

L

S

N

I

F

I

S

M

G

V

A

23

Plarre 2011 [25]

HPR7e

-

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

A

P

S

N

I

F

I

S

M

G

V

A

23

Plarre 2011 [25]

HPR7f

Chile CH03/08

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

S

S

N

I

S

I

S

M

G

V

A

23

Plarre 2011 [25]

HPR7g

Norway FJ594307

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

L

S

N

I

F

I

Y

M

G

V

A

23

Plarre 2011 [25]

HPR7h

Chile CH03/08

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

S

S

N

I

F

I

S

M

G

V

A

23

Plarre 2011 [25]

HPR7i

Norway R171/07

T

D

V

K

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

S

V

I

S

N

I

S

I

S

M

G

V

A

23

Plarre 2011 [25]

  1. Highlighted in bold were cases analyzed in this study.
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