Skip to main content

Table 1 Identity table of the full length of the HA gene of 10 Ontario H3N2 viruses isolated from swine in 2011-2012 and selected references viruses based on nucleotide sequence

From: Molecular characterization of H3N2 influenza A viruses isolated from Ontario swine in 2011 and 2012

  G1-A/sw/ON/114-13/12/H3N2/HA G1-A/sw/ON/115-2/12/H3N2/HA G1-A/sw/ON/118-38/12/H3N2/HA G1-A/sw/ON/120-55/12/H3N2/HA G2-A/sw/ON/104-25/12/H3N2/HA G2-A/sw/ON/204-76/12/H3N2/HA G2-A/sw/ON/105-56/12/H3N2/HA G2-A/sw/ON/107-22/12/H3N2/HA G3-A/sw/ON/103-18/11/H3N2/HA G3-A/sw/ON/11-105317/11/H3/HA
G1-A/sw/ON/114-13/12/H3N2/HA 100 99.9 99.9 99.9 94.8 94.8 94.8 94.8 94.9 95.2
G1-A/sw/ON/115-2/12/H3N2/HA 99.9 100 99.9 99.9 94.7 94.7 94.7 94.7 94.9 95.1
G1-A/sw/ON/118-38/12/H3N2/HA 99.9 99.9 100 100 94.7 94.7 94.7 94.7 94.9 95.1
G1-A/sw/ON/120-55/12/H3N2/HA 99.9 99.9 100 100 94.7 94.7 94.7 94.7 94.9 95.1
G2-A/sw/ON/104-25/12/H3N2/HA 94.8 94.7 94.7 94.7 100 99.9 99.9 99.9 94.9 94.9
G2-A/sw/ON/204-76/12/H3N2/HA 94.8 94.7 94.7 94.7 99.9 100 100 100 94.8 94.9
G2-A/sw/ON/105-56/12/H3N2/HA 94.8 94.7 94.7 94.7 99.9 100 100 100 94.8 94.9
G2-A/sw/ON/107-22/12/H3N2/HA 94.8 94.7 94.7 94.7 99.9 100 100 100 94.8 94.9
G3-A/sw/ON/103-18/11/H3N2/HA 94.9 94.9 94.9 94.9 94.9 94.8 94.8 94.8 100 99.5
G3-A/sw/ON/11-105317/11/H3N2/HA 95.2 95.1 95.1 95.1 94.9 94.9 94.9 94.9 99.5 100
MN/12707/05/H3N2/HA/IV 97 96.9 96.9 96.9 96.5 96.5 96.5 96.5 96.5 96.8
AB/14722/05/H3N2/HA/IV 97 96.9 96.9 96.9 96.5 96.5 96.5 96.5 96.5 96.8
TK/ON/31232/05/H3N2/HA/IV 96.9 96.8 96.8 96.8 96.4 96.4 96.4 96.4 96.4 96.6
BC/28103/05/H3N2/HA/IV 96.5 96.4 96.4 96.4 96 96 96 96 95.9 96.2
QC/4001/05/H3N2/HA 96.6 96.5 96.5 96.5 96.1 96.1 96.1 96.1 96.1 96.4
ON/RV1273/05/H3N2/HA/IV 97.3 97.2 97.2 97.2 96.8 96.8 96.8 96.8 96.8 97.1
ON/33853/05/H3N2/HA/IV 97.3 97.2 97.2 97.2 96.8 96.8 96.8 96.8 96.8 97.1
QC/1698-4/09/H3N2/HA/IV 96.1 96.1 96.1 96.1 95.5 95.5 95.5 95.5 95.6 95.9
QC/1840-2/09/H3N2/HA/IV 95.9 95.9 95.9 95.9 95.4 95.4 95.4 95.4 95.6 95.8
QC/382/09/H3N2/IV 96.1 96 96 96 95.5 95.5 95.5 95.5 95.5 95.7
QC/1257777/2010/H3N2/HA 95.8 95.8 95.8 95.8 95.2 95.2 95.2 95.2 95.2 95.4
QC/440-A/09/H3N2/HA/IV 95.6 95.6 95.6 95.6 95 95 95 95 95.2 95.4
MN/239105/09/H3N2/HA 95.8 95.8 95.8 95.8 95.3 95.3 95.3 95.3 95.5 95.8
QC/414/09/H3N2/HA/IV 95.7 95.6 95.6 95.6 95.4 95.4 95.4 95.4 95.7 95.9
QC/1267568/2010/H3N2/HA 95.2 95.1 95.1 95.1 94.6 94.6 94.6 94.6 94.8 95.1
QC/1267566/2010/H3N2/HA 95.1 95 95 95 94.3 94.3 94.3 94.3 94.3 94.5
TK/ON/FAV9/2011/H3N2/HA 94.7 94.7 94.7 94.7 99.7 99.7 99.7 99.7 94.8 94.9
TK/ON/FAV10/2011/H3N2/HA 94.7 94.6 94.6 94.6 99.6 99.6 99.6 99.6 94.8 94.9
QC/1265553/2010/H3N2/HA 94.6 94.6 94.6 94.6 98.6 98.6 98.6 98.6 94.8 94.9
QC/1262080/2010/H3N2/HA 94.5 94.5 94.5 94.5 98.8 98.8 98.8 98.8 94.6 94.8
QC/1257774/2010/H3N2/HA 94.6 94.5 94.5 94.5 98.7 98.7 98.7 98.7 94.4 94.6
OK/18717/99/H3N2/HA/III 94.2 94.2 94.1 94.1 93.7 93.8 93.8 93.8 93.7 93.9
OK/18089/99/H3N2/HA/III 94.2 94.1 94.1 94.1 93.6 93.8 93.8 93.8 93.7 94
WI/14094/99/H3N2/HA/III 94.2 94.2 94.2 94.2 93.9 94 94 94 93.7 94
IL/21587/99/H3N2/HA/III 94.1 94.1 94.1 94.1 93.8 93.9 93.9 93.9 93.6 93.9
TX/4199-2/98 90.4 90.3 90.3 90.3 90.1 90.3 90.3 90.3 89.4 89.7
IA/8548-1/98/H3N2/HA/I 90.5 90.4 90.4 90.4 90.2 90.4 90.4 90.4 89.4 89.7
NC/16497/99/H3N2/HA/I 90.7 90.7 90.7 90.7 90.5 90.7 90.7 90.7 90.1 90.3
NY/150/2000/H3N2/HA/II 93.1 93 93 93 92.4 92.5 92.5 92.5 92.4 92.5
CO/23619/99/H3N2/HA/II 92.7 92.7 92.7 92.7 92.1 92.2 92.2 92.2 92.1 92.3