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Table 2 miRNA homologs expressed by AHV-1 and MDV-1

From: Computational identification of microRNAs in Anatid herpesvirus 1 genome

Name

miRNA sequencea

No. of identical nt/total

in seed region (nt positions 2–8)

AHV-1-pre-miR-7

-CAUGGGAA CAUU-UAACACCCC

GCAUGGAA ACGUCCUGGGAAA- -

* * * * * †* * * † * † * † † *

5/7

MDV-1-miR-M13

 

AHV-1-pre-miR-9

UAUGUUUU GCCCGGGCAAAUG-UCUGUUGU UCCGUAGUGUUCUC

* * * * * * * * † * † † †

5/7

MDV-1-miR-M6-5p

  
  1. a Sequences of orthologous miRNAs expressed by AHV-1 and MDV-1 aligned using ClustalW2. The seed sequences are shown in boldface. Identical nucleotides and nucleotides with conserved target binding potential are indicated with * and †, respectively.
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Virology Journal

ISSN: 1743-422X