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Table 5 Nucleotide and amino acid of ORF sequence comparison (% sequence identity) of strain SDDM06-11 with selected CxFV isolates

From: Isolation and identification of a distinct strain of Culex Flavivirus from mosquitoes collected in Mainland China

SDDM06-11

C

PrM

E

NS1

NS2a

NS2b

NS3

NS4a

NS4b

NS5

Total

 

417(139)a

429 (143)

1281 (427)

1107 (369)

690 (230)

381 (127)

1779 (593)

567 (189)

771 (257)

2667 (889)

10089 (3363)

Tokyo

94.5 (95.0)b

95.3 (98.6)

94.6 (98.6)

94.7 (99.2)

98.3 (97.8)

96.9 (94.5)

94.3 (97.5)

94.0 (98.4)

94.0 (97.3)

94.7 (98.7)

94.9 (98.0)

NIID-21-2

94.7 (95.0)

95.6 (99.3)

94.6 (98.6)

94.8 (99.2)

98.3 (97.8)

96.9 (94.5)

94.5 (97.6)

94.0 (98.4)

94.0 (97.3)

95.0 (99.1)

95.0 (98.2)

Iowa07

95.0 (94.2)

95.6 (99.3)

95.0 (98.8)

94.8 (99.2)

98.6 (98.3)

96.6 (94.5)

94.5 (97.5)

94.0 (98.4)

94.2 (97.3)

95.1 (99.3)

95.1 (98.2)

HOU24518

95.0 (95.0)

94.6 (98.6)

94.5 (98.6)

94.4 (99.2)

98.3 (98.3)

96.1 (95.3)

94.2 (97.5)

94.4 (99.5)

94.4 (96.9)

94.6 (98.7)

94.8 (98.1)

CxFV-Mex07

91.8 (89.9)

92.8 (98.6)

89.4 (97.9)

91.3 (98.1)

94.8 (93.9)

92.4 (93.7)

88.8 (96.5)

87.5 (96.3)

88.8 (95.7)

89.8 (97.5)

90.2 (96.6)

UGANDA08

92.3 (91.4)

93.0 (97.9)

90.2 (97.9)

92.0 (98.1)

94.8 (94.3)

92.9 (94.5)

89.3 (96.5)

88.4 (96.3)

87.7 (94.2)

89.8 (97.2)

90.5 (96.5)

  1. a Nucleotide number were ahead and amino acid number shown in brackets.
  2. b Percent nucleotide sequence homology were ahead and amino acid sequence homology shown in brackets.