Figure 2

Maximum likelihood trees based on the alignment of the sequences of four African cassava mosaic Burkina Faso virus isolates (in bold; see Table 1 for isolates names and acronyms), plus additional DNA-A and DNA-A-like sequences originated from Africa and the Mediterranean region. In (A) the non-recombinant portion (ORFs: AV2, AV1, AC2 and AC3; see Figure 1) of the genome and in (B) the recombinant portion (covering 90% of 3' portion of Rep, entire AC4 ORF and IR; see Figure 1). Begomovirus acronyms used are described in the Additional file 1: Table S1 according to Fauquet et al. [15] isolate descriptors.