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Table 2 Primers used in real time PCR assays

From: Cellular transcripts of chicken brain tissues in response to H5N1 and Newcastle disease virus infection

Amplification target

Sequence (5'-3')

Hsp70 F

GGCACCATCACTGGGCTTA

Hsp70 R

TCCAAGCCATAGGCAATAGCA

Hsp70 Probe

6FAM-CGTGATGCGTATTATCAATGAGCCCACA-Iowa Black FQ

SNAP25 F

AACGAAATGGATGAGAACCTTG

SNAP25 R

TTATTGGAATCAGCCTTCTCCA

SNAP25 Probe

6FAM-ACGTCACATGGCCCTGGACATGGGC-Iowa Black FQ

CRMP2 F

AGATCACGGTGTGAATTCATTC

CRMP2 R

GGATAACACTCAGGACCTCATA

CRMP2 Probe

6FAM-AGACCGCTTCCAGCTGTCTGACTCGCAG-Iowa Black FQ

SEPT5 F

GAGAAGCAGGACCATGAGAA

SEPT5 R

GACTCTCCTGCAACCATC

SEPT5 Probe

6FAM-ACTCTGCCGAACCAGGTCCACCGGA-Iowa Black FQ

VIM F

ACAGCACATCCAAATCGATATG

VIM R

TTCGGAGAGATCTGCAAATTTG

VIM Probe

6FAM-ACTGCTGCCCTGCGCGATGTTCGT-Iowa Black FQ

TBCD F

AAACATCCTGGAGAGCTTCA

TBCD R

CTGGTACTTGTCCATTATAACGATG

TBCD Probe

6FAM-ACCCGGTGGCCCAAGAGGTGATCGT-Iowa Black FQ

Hsp60 F

CATGGTGTGACCGTAGCAA

Hsp60 R

GGCAATAGAGCGTACCAAGA

Hsp60 probe

6FAM-ACGAAGAGGCTGGGGATGGCACCACT-Iowa Black FQ

IL-8 F

CACTGTGAAAAATTCAGAAATCATTGTTA

IL-8 R

CTTCACCAAATACCTGCACAACCTTC

IL-8 probe

6FAM-AATGGAAACGAGGTCTGCTTAAACCCCAAG-Iowa Black FQ

CNTNAP5 F

GAGTTGAAATAAGATCCCCCAA

CNTNAP5 R

CATAGTGCCACTGATTGTCATT

CNTNAP Probe

6FAM-CGGCCCCACAGAAGCAACTGTGCAGT-Iowa Black FQ

TRPV6 F

CCTGTGCGTAGCGTTGGAT

TRPV6 R

GGTTCCTGCGGGTGGAA

TRPV6 Probe

6FAM-AACCCATCGACGAGAGGGGCCCCAT-Iowa Black FQ

18s rRNA F

AGCTCGTAGTTGGATTTCTGTTAATAATTTA

18s rRNA R

GCATATGCCTGCTTTAAGCACTCT

18s rRNA probe

6FAM-TTTCTCAAAGTAAAATTTCA-Iowa Black FQ