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Table 3 Comparison of antigenically important amino acids in HA genes of Pakistani AIV H5N1 with initially isolated strain during 2006

From: Sequence and phylogenetic analysis of highly pathogenic avian influenza H5N1 viruses isolated during 2006–2008 outbreaks in Pakistan reveals genetic diversity

Virus names

39 E

141 S

153 K

155 D

156 A

162 R

181 P

185 A

189 R

217

S

226

M

252

N

289

M

307

K

376

D

Ck/Rawalakot/2441/06

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Ck/Sihala/3303/06

G

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Ck/Laore/3320/06

G

-

-

-

T

-

-

-

-

-

-

-

-

-

-

Gs/Lahore/3321/06

G

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Pck/Mansehra/7558/07

G

-

-

-

-

-

-

-

-

-

-

-

-

-

N

Gs/Islamabd/7757/07

G

-

-

-

-

-

-

-

-

-

-

-

K

R

-

Tk/Islamabad/7871/07

G

-

-

-

-

-

-

-

-

-

-

-

K

R

-

Tk/Islamabad/7873/07

G

-

-

-

-

-

-

-

-

-

-

-

K

-

N

Crow/Peshawar/7914/07

G

-

-

-

-

-

-

-

-

-

-

-

-

-

N

Pck/Chakshahzad/9238/07

G

-

-

-

-

-

-

-

-

-

-

-

-

-

N

Ck/Mansehra/10337/07

G

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Ck/Karachi/520/08

G

-

-

-

-

-

-

-

-

P

-

-

-

-

-

Ck/Lahore/610/08

G

P

-

-

T

I

S

-

-

-

-

Y

-

-

-

Ck/Karachi/612/08

G

P

-

G

T

-

S

T

K

-

I

Y

-

-

-

Crow/Karachi/11672/08

G

-

R

-

S

-

-

-

-

-

-

-

-

-

-

  1. Ck: Chicken, Gs: Goose, Ty: Turkey, Cw: Crow, Pk: Peacock, Pak: Pakistan.
  2. - Not done/Data not available.
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Virology Journal

ISSN: 1743-422X