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Table 3 Comparison of antigenically important amino acids in HA genes of Pakistani AIV H5N1 with initially isolated strain during 2006

From: Sequence and phylogenetic analysis of highly pathogenic avian influenza H5N1 viruses isolated during 2006–2008 outbreaks in Pakistan reveals genetic diversity

Virus names 39 E 141 S 153 K 155 D 156 A 162 R 181 P 185 A 189 R 217 S 226 M 252 N 289 M 307 K 376 D
Ck/Rawalakot/2441/06 - - - - - - - - - - - - - - -
Ck/Sihala/3303/06 G - - - - - - - - - - - - - -
Ck/Laore/3320/06 G - - - T - - - - - - - - - -
Gs/Lahore/3321/06 G - - - - - - - - - - - - - -
Pck/Mansehra/7558/07 G - - - - - - - - - - - - - N
Gs/Islamabd/7757/07 G - - - - - - - - - - - K R -
Tk/Islamabad/7871/07 G - - - - - - - - - - - K R -
Tk/Islamabad/7873/07 G - - - - - - - - - - - K - N
Crow/Peshawar/7914/07 G - - - - - - - - - - - - - N
Pck/Chakshahzad/9238/07 G - - - - - - - - - - - - - N
Ck/Mansehra/10337/07 G - - - - - - - - - - - - - -
Ck/Karachi/520/08 G - - - - - - - - P - - - - -
Ck/Lahore/610/08 G P - - T I S - - - - Y - - -
Ck/Karachi/612/08 G P - G T - S T K - I Y - - -
Crow/Karachi/11672/08 G - R - S - - - - - - - - - -
  1. Ck: Chicken, Gs: Goose, Ty: Turkey, Cw: Crow, Pk: Peacock, Pak: Pakistan.
  2. - Not done/Data not available.