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Table 1 Summarized profile of Pakistani AIV H5N1 isolates used in this study

From: Sequence and phylogenetic analysis of highly pathogenic avian influenza H5N1 viruses isolated during 2006–2008 outbreaks in Pakistan reveals genetic diversity

S# Viruses nomenclature Summarized profile
   Serotype Date/Year of isolation Place of isolation Host specie Clade Pathogninicity Genes sequenced
1 A/Ck/Rawalakot/NARC2441/06 H5N1 28-02-2006 Rawalakot, AJK Chicken 2.2.3 HPAI Whole Genome
2 A/Ck/Sihala/NARC3303/06 H5N1 14-04-2006 Islamabad, ICT Breeder 2.2.3 HPAI Whole Genome
3 A/Ck/Lahore/NARC3320/06 H5N1 18-04-2006 Lahore, Punjab Broiler 2.2.3 HPAI Whole Genome
4 A/Gs/Lahore/NARC3321/06 H5N1 18-04-2006 Lahore, Punjab Goose 2.2.3 HPAI HA and NA genes
5 A/Pck/Mansehra/NARC-7558/07 H5N1 02-02-2007 Mansehra, KPK Peacock 2.2.3 HPAI HA and NA genes
6 A/Gs/Islamabad/NARC-7757/07 H5N1 11-02-2007 Islamabad, ICT Goose 2.2.3 HPAI HA and NA genes
7 A/Tk/Islamabad/NARC-7871/07 H5N1 13-02-2007 Islamabad, ICT Turkey 2.2.3 HPAI HA and NA genes
8 A/Tk/Islamabad/NARC-7873/07 H5N1 19-02-2007 Islamabad, ICT Turkey 2.2.3 HPAI HA and NA genes
9 A/Crow/Peshawar/NARC-7914/07 H5N1 22-02-2007 Peshawar, KPK Crow 2.2.3 HPAI HA and NA genes
10 A/Pck/Cahkshahzad/NARC-9238/07 H5N1 21-05-2007 Islamabad, ICT Peacock 2.2.3 HPAI HA and NA genes
11 A/Ck/Manshera/NARC-10337/07 H5N1 14-09-2007 Mansehra, KPK Broiler 2.2.3 HPAI HA and NA genes
12 A/Ck/Karachi/NARC-520/08 H5N1 08-01-2008 Karachi, Sindh Layer 2.2.3 HPAI HA, NA &NS genes
13 A/Ck/Lahore/NARC-610/08 H5N1 08-04-2008 Lahore, Punjab Layer 2.2.3 HPAI HA, NA &NS genes
14 A/Ck/Karachi/NARC-612/08 H5N1 15-04-2008 Karachi, Sindh Layer 2.2.3 HPAI HA, NA &NS genes
15 A/Crow/Karachi/NARC-11672/08 H5N1 12-02-2008 Karachi, Sindh Crow 2.2.3 HPAI HA, NA &NS genes
  1. ICT: Islamabad Capital Territory, KPK: Khyber Pakhtoon Khawa, AJK: Azad Jammu & Kashmir, Pak: Pakistan, NARC: National Agricultural Research Center, CK: Chicken, Gs: Goose, Pck: Peacock, Tk: Turkey.