Table 1 Summarized profile of Pakistani AIV H5N1 isolates used in this study
S# | Viruses nomenclature | Summarized profile | ||||||
|---|---|---|---|---|---|---|---|---|
Serotype | Date/Year of isolation | Place of isolation | Host specie | Clade | Pathogninicity | Genes sequenced | ||
1 | A/Ck/Rawalakot/NARC2441/06 | H5N1 | 28-02-2006 | Rawalakot, AJK | Chicken | 2.2.3 | HPAI | Whole Genome |
2 | A/Ck/Sihala/NARC3303/06 | H5N1 | 14-04-2006 | Islamabad, ICT | Breeder | 2.2.3 | HPAI | Whole Genome |
3 | A/Ck/Lahore/NARC3320/06 | H5N1 | 18-04-2006 | Lahore, Punjab | Broiler | 2.2.3 | HPAI | Whole Genome |
4 | A/Gs/Lahore/NARC3321/06 | H5N1 | 18-04-2006 | Lahore, Punjab | Goose | 2.2.3 | HPAI | HA and NA genes |
5 | A/Pck/Mansehra/NARC-7558/07 | H5N1 | 02-02-2007 | Mansehra, KPK | Peacock | 2.2.3 | HPAI | HA and NA genes |
6 | A/Gs/Islamabad/NARC-7757/07 | H5N1 | 11-02-2007 | Islamabad, ICT | Goose | 2.2.3 | HPAI | HA and NA genes |
7 | A/Tk/Islamabad/NARC-7871/07 | H5N1 | 13-02-2007 | Islamabad, ICT | Turkey | 2.2.3 | HPAI | HA and NA genes |
8 | A/Tk/Islamabad/NARC-7873/07 | H5N1 | 19-02-2007 | Islamabad, ICT | Turkey | 2.2.3 | HPAI | HA and NA genes |
9 | A/Crow/Peshawar/NARC-7914/07 | H5N1 | 22-02-2007 | Peshawar, KPK | Crow | 2.2.3 | HPAI | HA and NA genes |
10 | A/Pck/Cahkshahzad/NARC-9238/07 | H5N1 | 21-05-2007 | Islamabad, ICT | Peacock | 2.2.3 | HPAI | HA and NA genes |
11 | A/Ck/Manshera/NARC-10337/07 | H5N1 | 14-09-2007 | Mansehra, KPK | Broiler | 2.2.3 | HPAI | HA and NA genes |
12 | A/Ck/Karachi/NARC-520/08 | H5N1 | 08-01-2008 | Karachi, Sindh | Layer | 2.2.3 | HPAI | HA, NA &NS genes |
13 | A/Ck/Lahore/NARC-610/08 | H5N1 | 08-04-2008 | Lahore, Punjab | Layer | 2.2.3 | HPAI | HA, NA &NS genes |
14 | A/Ck/Karachi/NARC-612/08 | H5N1 | 15-04-2008 | Karachi, Sindh | Layer | 2.2.3 | HPAI | HA, NA &NS genes |
15 | A/Crow/Karachi/NARC-11672/08 | H5N1 | 12-02-2008 | Karachi, Sindh | Crow | 2.2.3 | HPAI | HA, NA &NS genes |