Transcriptome analysis of symptomatic and recovered leaves of geminivirus-infected pepper (Capsicum annuum)

Table 1 Summary of nine 454-pyrosequencing runs used in this study

Tissue	Number of runs	Total no. reads	Average length (nt)	Average quality
Mock ^a	1	222,558	99.4	27.8
Symptomatic ^b	5	865,103	98.6	28.1
Recovered ^c	3	750,906	101.7	27.5
Total	9	1,838,567	99.8

^a Pool of mock-inoculated leaf tissue sampled at 9, 15 and 20 dpi.
^b Pool of symptomatic leaf tissue sampled at 9 dpi. A single run had low quality sequences and thus was discarded from downstream analyses. A total of 770,694 sequences from a total of 4 runs were used in downstream analyses of symptomatic tissues.
^c Pool of recovered leaf tissue sampled at 20 dpi.