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Table 1 Evidence for recombinant samples

From: Human Papillomavirus (HPV) genotype 18 variants in patients with clinical manifestations of HPV related infections in Bilbao, Spain

Sample \ Gene

E6

E7

E4

L1

URR

Program inference

LSM3

Af

Af

X

X

E

No recombination detected.

LSCE

Af

Af

E

E

E

Maxchi detected recombination.

(LSCM is one of the donors)

LSMK1

AsA

E

Af

E

Af

Maxchi detected recombination.

(LSCI and LSCR1 are the donors)

LSCR

E

E

E

E

E

No recombination detected.

LSMH1

E

E

E

E

E

No recombination detected.

LSC5

E

E

E

E

E

No recombination detected.

LSM7

E

E

E

E

E

No recombination detected.

LSCB

AsA

E

E

E

E

No recombination detected.

LSCM

Af

E

Af

Af

E

No recombination detected.

  1. Isolates analyzed for possible recombination. Phylogenetic trees were constructed for each sequenced region and isolates were classified as Asian-amerindian (AsA), European (E) or African (Af) variants. RDP, Maxchi and Chimaera were used for the detection of recombination. URR: Upstream regulatory region, X: absence of data.