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Table 1 Evidence for recombinant samples

From: Human Papillomavirus (HPV) genotype 18 variants in patients with clinical manifestations of HPV related infections in Bilbao, Spain

Sample \ Gene E6 E7 E4 L1 URR Program inference
LSM3 Af Af X X E No recombination detected.
LSCE Af Af E E E Maxchi detected recombination.
(LSCM is one of the donors)
LSMK1 AsA E Af E Af Maxchi detected recombination.
(LSCI and LSCR1 are the donors)
LSCR E E E E E No recombination detected.
LSMH1 E E E E E No recombination detected.
LSC5 E E E E E No recombination detected.
LSM7 E E E E E No recombination detected.
LSCB AsA E E E E No recombination detected.
LSCM Af E Af Af E No recombination detected.
  1. Isolates analyzed for possible recombination. Phylogenetic trees were constructed for each sequenced region and isolates were classified as Asian-amerindian (AsA), European (E) or African (Af) variants. RDP, Maxchi and Chimaera were used for the detection of recombination. URR: Upstream regulatory region, X: absence of data.