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Figure 2 | Virology Journal

Figure 2

From: High genetic diversity and predominance of Rhinovirus A and C from Panamanian hospitalized children under five years with respiratory infections

Figure 2

Phylogeny of the VP4-VP2 sequences amplified of HRV variants detected in the study in comparison of those sequences from serotype reference strains of species A and B and provisionally assigned for species C. Phylogenies were constructed under maximum likelihood criterion (PhyML software), with the following models of nucleotide substitution: GTR + I + G for species A and B and HKY + I + G for species C. The GenBank accession numbers assigned for the Panamanian samples were JN797533 to JN797594. For species B and C variants, HRV-A (GenBank accession number DQ473509) was used to root the trees; while sequence HRV–B14 (GenBank accession number NC_001490) was used to root the species A tree.

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