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Table 2 Bestkeeper correlation and regression analysis of housekeeping genes

From: 18S rRNAis a reliable normalisation gene for real time PCR based on influenza virus infected cells

 

18S rRNA

GAPDH

ACTB

ATP5B/ ATP5G1cp

 

vs.

vs.

vs.

vs.

 

BestKeeper

BestKeeper

BestKeeper

BestKeeper

 

Coefficient of correlation [r]

HBECs

0.962

0.871

0.709

0.543

PTECs

0.843

0.743

0.741

0.73

Chicken lung cells

0.944

0.832

0.845

-

Duck lung cells

0.836

0.792

0.542

-

  1. Pairwise correlation and regression analysis using Bestkeeper correlation analysis (n=12) found 18S rRNA as the most suitable housekeeping gene. Note that highest correlation between 18S rRNA and the BestKeeper index (p<0.01) was found in all the four cell types used. *ATP5B and ATP5G1were included in HBECs and PTECs analysis respectively.