From: Frequency of subtype B and F1 dual infection in HIV-1 positive, Brazilian men who have sex with men
N0. | Primer | Combinations of Primers | Fragment amplified | PCR type | sequence (5’-3’) | Primer Position3 | Product size bp |
---|---|---|---|---|---|---|---|
1 | DPSH-O-Fwd1 | 1+2 | pol-IN | Outer | ATAAGGCACAGGAGGAACATGAAAAATATCACAAC | 4246-4280 | 266 |
2 | DPLINF-O-Rev2 | Â | Â | Â | TTTTTTTTTCTGCTGGGATAACTTCTGCTTCTAGG | 4512-4478 | Â |
3 | DPSH-N-Fwd | 3+4 | Â | Nested | AGGAGGAACATGAAAAATATCACAAC | 4255-4280 | 248 |
4 | DPINF-N-Rev | Â | Â | Â | CTGCTGGGATAACTTCTGCTTCTAGG | 4503-4478 | Â |
5 | DPINF-O-Fwd | 5+2 | L-pol | Outer | TTTTTTTTTTTCTGATAAATGGACAGTGCAGCCTATACAAT | 3247-3285 | 1265 |
6 | DPINF-N-Fwd | 6+4 | Â | Nested | CTGATAAATGGACAGTGCAGCCTATACAAT | 3256-3285 | 1247 |
7 | B01-Fwd | 7+2 | M-pol | Outer | TGGGTTATGAACTCCATCCTG | 3238-3258 | 1274 |
8 | B02-Fwd | 8+4 | Â | Nested | CTGGATTCCTGAGTGGGAGTT | 3776-3796 | 727 |