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Table 2 Oligonucleotides used in this study

From: Complete genome sequence of an astrovirus identified in a domestic rabbit (Oryctolagus cuniculus) with gastroenteritis

Oligo name

Note

Sequence (5′ – 3′)

MDS-4

Reverse transcription

CGCTCTTCCGATCTNNNNNN

MDS-189

Library amplification

CTGTCTGGCTCTTCCGATCT

MDS-115

Degenerate astrovirus consensus

CCATCAGGTCARWWNTCAACAAC

MDS-116

Degenerate astrovirus consensus

CTCGCTAATHTAYGGDGATGA

MDS-117

Degenerate astrovirus consensus

GGTTTNACCCACATNCCAAA

MDS-118

Degenerate astrovirus consensus

GTCCAACTGTGADNCCACARAA

MDS-119

Rabbit astrovirus diagnostic

ATAATAACATGGTCAACTATTGGCTTC

MDS-120

Rabbit astrovirus diagnostic

GACATCCTTATACATTTTCACAACTTT

MDS-156

Vertebrate rRNA (L2513)

GCCTGTTTACCAAAAACATCAC

MDS-157

Vertebrate rRNA (H2714)

CTCCATAGGGTCTTCTCGTCTT

MDS-298

Genome recovery and sequencing (27–46 forward)

CGGCCAGAGAGCCTATTACC

MDS-296

5′ RACE (149–168 reverse)

GGCTAGAGGAATGGGGTCAG

MDS-299

Genome recovery and sequencing (1146–1165 forward)

GCTCGTTCCGATAATTGCTC

MDS-300

Genome recovery and sequencing (1229–1248 reverse)

GCAACTAACCACGCACAATG

MDS-144

Genome recovery and sequencing (2554–2564 forward)

TCTGGACYGARGARGARTA

MDS-300

Genome recovery and sequencing (2639–2659 reverse)

CACTCCATTCAGGGTAACCAA

MDS-135

Genome recovery and sequencing (3573–3592 forward)

TCCACTCCCGCCTACCCCAA

MDS-145

Genome recovery and sequencing (3622–3641 reverse)

CCACCCACAATCAGAGAGGT

MDS-119

Genome recovery and sequencing (4165–4191 forward)

ATAATAACATGGTCAACTATTGGCTTC

MDS-125

Genome recovery and sequencing (4287–4308 reverse)

CATAATCAGATGGGAGGACAGG

MDS-147

Genome recovery and sequencing (4602–4620 forward)

CTTCGCAGCCACTCTCTTG

MDS-137

Genome recovery and sequencing (4668–4683 reverse)

TTGGTCCTCCCCTCCA

MDS-138

3′ RACE (5719–5729 forward)

TGGTGGTTTGT

MDS-150

Genome recovery and sequencing (5759–5779 reverse)

TCTGAAATTGCACTGTGTTGG

MDS-121

RACE oligo-dT primer

CCAGTGAGCAGAGTGACGAGGACTCGAGCTCAAGCT17

MDS-122

RACE outer adapter primer

CCAGTGAGCAGAGTGACG

MDS-123

RACE inner adapter primer

GAGGACTCGAGCTCAAGC